Non-Coding RNA Search

Ss1.1-Ova1-OVRM10112E08.5

Sequence:


               
               TTTTCCGGCGGGTGCGCGGGGCTCGGCGGCCTCCGCGGTCCGCGCGAGCGCTCCCGCCCG
CTCACTGTCTCCCGGTTCCGGGGCGGCTAGTCTGTGGCGAGAGAGTGGGGCCGGGCCCGC
TTCTGGCCTGACCCAGGAGGTGACCTTGGTTGAGTCGCCTGTAGCGCCGAGCCGTGGCGC
CCGTCTGTGGCGCGGGCCTGTCAGGGACCCGGCTCCCGAGCGGTTGAGGACACAGACCTC
GAGCGGCCCCACGGGCTGCCCCGTGGCAGGGGGAGCGCCGGGCCTCTGGCGGGGGTGCTG
GGAAATTCGGCCGGGGGGAGATGCCCCTCCATGTGAAATGGCCGTTCCCTGCGGTGCCGC
CGCTCACCTGGACCCTGGCCAGCAGCGTCGTCATGGGCCTGGTGGGCACCTACAGCTGCT
TCTGGACCAAGTACATGAACCACCTCACGGTCCACAACAAGGAGGTGCTGTACGACCTCA
TCGAAAACCGAGGCCCAGCCACACCCCTCATCACGGTCTCCAATCACCAGTCCTGCATGG
ATGACCCTCATCTCTGGGGGATCCTGAAACTCCGCCACATCTGGAACCTGAAGTTGATGC
GTTGGACGCCCGCGGCTGCAGACATCTGCTTCACCAAGGAGCTACACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTCCGGCGGGTGCGCGGGGCTCGGCGGCCTCCGCGGTCCGCGCGAGCGCTCCCGCCCG
CTCACTGTCTCCCGGTTCCGGGGCGGCTAGTCTGTGGCGAGAGAGTGGGGCCGGGCCCGC
TTCTGGCCTGACCCAGGAGGTGACCTTGGTTGAGTCGCCTGTAGCGCCGAGCCGTGGCGC
CCGTCTGTGGCGCGGGCCTGTCAGGGACCCGGCTCCCGAGCGGTTGAGGACACAGACCTC
GAGCGGCCCCACGGGCTGCCCCGTGGCAGGGGGAGCGCCGGGCCTCTGGCGGGGGTGCTG
GGAAATTCGGCCGGGGGGAGATGCCCCTCCATGTGAAATGGCCGTTCCCTGCGGTGCCGC
CGCTCACCTGGACCCTGGCCAGCAGCGTCGTCATGGGCCTGGTGGGCACCTACAGCTGCT
TCTGGACCAAGTACATGAACCACCTCACGGTCCACAACAAGGAGGTGCTGTACGACCTCA
TCGAAAACCGAGGCCCAGCCACACCCCTCATCACGGTCTCCAATCACCAGTCCTGCATGG
ATGACCCTCATCTCTGGGGGATCCTGAAACTCCGCCACATCTGGAACCTGAAGTTGATGC
GTTGGACGCCCGCGGCTGCAGACATCTGCTTCACCAAGGAGCTACACT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|31455224|gb|AAH05062.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|31455224|gb|AAH05062.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               107-219, + strand, RNAz p=0.880606

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               107-219, + strand, RNAz p=0.880606

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               67-647, gnl|bosTau2|chrX (14907582-14906999)
               

               
               67-647, gnl|Hg17|chrX (153160828-153162708)
               

               
               67-647, gnl|Mm7|chrX (69669514-69670623)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               67-647, gnl|bosTau2|chrX (14907582-14906999)
               

               
               67-647, gnl|Hg17|chrX (153160828-153162708)
               

               
               67-647, gnl|Mm7|chrX (69669514-69670623)

	67-647, gnl\|bosTau2\|chrX (14907582-14906999)
	67-647, gnl\|Hg17\|chrX (153160828-153162708)
	67-647, gnl\|Mm7\|chrX (69669514-69670623)