Non-Coding RNA Search

Ss1.1-Ova1-OVRM10113F10.5

Sequence:


               
               GGTATGCAGATTATTTTTAGGAAAGCAGATGTGGAAGTTGAAGATACAGAAATTTATGTT
CTTAAAACATCTCACTCAGGGGTTCCTTGGAAAGTCTTGGTGTGCCTTCAGTAATAATAT
ACACCTATATGAACATGGCTGCCTTGAAAGTCTGACCACCACCTGCCAAGCTCCTCTCCT
GTCATAAAGCCAGGAGCCAATTTCTTTCTACTACCCAGGATTGCCCTTTAGTAGACTCTA
TTTAGTCCATGTCCAAGAGAAAATTAATTCCTTTCTCATACTAATATCTACCTTTTGAGC
CCTGTTTCTTGGCACAGTTTCTCTTTCCAGAATACTTGACATTATCAGTCTTTGTCCTCT
TCAGCAGAGATCCTCCTCCTTAACCACCAGTTGACTATATCCAAATACAAGAAACACATA
TATAGTAGCTAGGATAGGGTAGTAGTGGTAAAGGAGAGGTTCCTTACATCTCTGTCCTTC
AAGCTACAAACAAAAAATAAACCCTTATTTTTTAATGTCTTTCAAAGTCTAGATGGTTAG
CATAACATTGCGTATGTAGAACATAAGGTGTATGTGCCAGGTACAGCTGGCTAGCTTTGT
GTTATTGCTTTTTGCTTGAAGTGAAGACCTGGAGTCCATCATGATTTTTTCTAGGGTTTA
AGTTCCTGGTCTTTTGTGAGCAACTGCTGAACTAAGAACACAAACATTCAGTAGGAAATC
TGAAGCCATACTTAAAAATGAATATTTCCCTGAAAGAAACAATTTGCAGAAATGTATCTC
TACCTGGAAGATGTGAACCTTTACATTATTCCAAAGAGCCATTTGTCTTTTGAATGGCTG
CTCCATTTATAGTCCTCAGTTTACATTTGTATAGCTAAATATCCTGTTCTGGTCCCTCTT
CCTTTAAGAAAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTATGCAGATTATTTTTAGGAAAGCAGATGTGGAAGTTGAAGATACAGAAATTTATGTT
CTTAAAACATCTCACTCAGGGGTTCCTTGGAAAGTCTTGGTGTGCCTTCAGTAATAATAT
ACACCTATATGAACATGGCTGCCTTGAAAGTCTGACCACCACCTGCCAAGCTCCTCTCCT
GTCATAAAGCCAGGAGCCAATTTCTTTCTACTACCCAGGATTGCCCTTTAGTAGACTCTA
TTTAGTCCATGTCCAAGAGAAAATTAATTCCTTTCTCATACTAATATCTACCTTTTGAGC
CCTGTTTCTTGGCACAGTTTCTCTTTCCAGAATACTTGACATTATCAGTCTTTGTCCTCT
TCAGCAGAGATCCTCCTCCTTAACCACCAGTTGACTATATCCAAATACAAGAAACACATA
TATAGTAGCTAGGATAGGGTAGTAGTGGTAAAGGAGAGGTTCCTTACATCTCTGTCCTTC
AAGCTACAAACAAAAAATAAACCCTTATTTTTTAATGTCTTTCAAAGTCTAGATGGTTAG
CATAACATTGCGTATGTAGAACATAAGGTGTATGTGCCAGGTACAGCTGGCTAGCTTTGT
GTTATTGCTTTTTGCTTGAAGTGAAGACCTGGAGTCCATCATGATTTTTTCTAGGGTTTA
AGTTCCTGGTCTTTTGTGAGCAACTGCTGAACTAAGAACACAAACATTCAGTAGGAAATC
TGAAGCCATACTTAAAAATGAATATTTCCCTGAAAGAAACAATTTGCAGAAATGTATCTC
TACCTGGAAGATGTGAACCTTTACATTATTCCAAAGAGCCATTTGTCTTTTGAATGGCTG
CTCCATTTATAGTCCTCAGTTTACATTTGTATAGCTAAATATCCTGTTCTGGTCCCTCTT
CCTTTAAGAAAC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               151-242, - strand, RNAz p=0.526403

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               151-242, - strand, RNAz p=0.526403

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               6-242, gnl|bosTau2|chr2 (15142162-15141928)
               

               
               6-242, gnl|Hg17|chr2 (175845423-175845141)
               


               
               262-911, gnl|bosTau2|chr2 (15141935-15141298)
               

               
               262-911, gnl|Hg17|chr2 (175845148-175843003)
               

               
               262-911, gnl|Mm7|chr2 (73726152-73725403)

Aligned organism(s): 5 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-242, gnl|bosTau2|chr2 (15142162-15141928)
               

               
               6-242, gnl|Hg17|chr2 (175845423-175845141)
               


               
               262-911, gnl|bosTau2|chr2 (15141935-15141298)
               

               
               262-911, gnl|Hg17|chr2 (175845148-175843003)
               

               
               262-911, gnl|Mm7|chr2 (73726152-73725403)

	6-242, gnl\|bosTau2\|chr2 (15142162-15141928)
	6-242, gnl\|Hg17\|chr2 (175845423-175845141)

	262-911, gnl\|bosTau2\|chr2 (15141935-15141298)
	262-911, gnl\|Hg17\|chr2 (175845148-175843003)
	262-911, gnl\|Mm7\|chr2 (73726152-73725403)