Ss1.1-Ova1-OVRM10115H10.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGGACTCGCGGCTGGCCAGCTGCAGGCTGCCGGGGCGCAAAGTAGCGCCGGGCCGGGCTG GGCGAGCGCACGGCCATGGCCCCGTGGTTGCAGCTCTGCTCTGTCTTCTTCACCGTCAAC GCCTGCCTCAACGGCTCGCAATTGGCCGTGGCCGCAGGTGGCTCCAGCAGAGCTCGGGGC GGCGACACCTGCGGCTGGAGGGGAGTGGGGCCGGCCAGCAGAAACAGTGGGCTGCACAAC ATCACCTTCAGATATGACAACTGCACCACTTACTTGAGTCCTGTGGGGAAGCATGTGATC GCCGACGCCCAGAATATCACCATCAGTCAGTACGCCTGCCACGACCAAGTGGCAGTCACC ATTCTCTGGTCCCCAGGGGCCCTCGGCATCGAATTCCTAAAAGGATTTCGGGTAATACTG GAGGAGCTGAAGTCAGAAGGAAGACAGTGCCAACAACTGATTCTGAAGGACCCGAAGCAG CTCAACAGTAGCTTCAAAAGAGCTGGAATGGAATCTCAGCCTTTCCTGAATATGAAATTT GAAACAGATTACTTTGTCAAGATTGTCCCTTTTCCTTCCATTAAAAACGAAAGCAATTAT CACCCTTTCTTCTTTAGAACCCGCACCTGTGACCTGCTATTACAGCCGGACAACCTGGCC TGTAAACCCTTCTGGAAGCCTCGGAACCTCAACATCACCCAACATGGCTCAGACATGCAG GTGTCCTTCGACCACGCGCCACATACCTTCGGCTTCCGTTTCTTTTATCTTCACTACAAG CTCAAGCACGAAGGACTCTTCAAACGAAAGACCTGCAAACAGGAGCAAAATACAGAGACA ACCAGCTGCCTCCTTCAAAATGTATCTCCTGGGGATTATATAATTGAGCTGGTGGATGAC ------------AGAAAAGTGATGCATTATGCCTTA------------TCCCCATGGGCT GGGCCCATAGAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGGACTCGCGGCTGGCCAGCTGCAGGCTGCCGGGGCGCAAAGTAGCGCCGGGCCGGGCTG GGCGAGCGCACGGCCATGGCCCCGTGGTTGCAGCTCTGCTCTGTCTTCTTCACCGTCAAC GCCTGCCTCAACGGCTCGCAATTGGCCGTGGCCGCAGGTGGCTCCAGCAGAGCTCGGGGC GGCGACACCTGCGGCTGGAGGGGAGTGGGGCCGGCCAGCAGAAACAGTGGGCTGCACAAC ATCACCTTCAGATATGACAACTGCACCACTTACTTGAGTCCTGTGGGGAAGCATGTGATC GCCGACGCCCAGAATATCACCATCAGTCAGTACGCCTGCCACGACCAAGTGGCAGTCACC ATTCTCTGGTCCCCAGGGGCCCTCGGCATCGAATTCCTAAAAGGATTTCGGGTAATACTG GAGGAGCTGAAGTCAGAAGGAAGACAGTGCCAACAACTGATTCTGAAGGACCCGAAGCAG CTCAACAGTAGCTTCAAAAGAGCTGGAATGGAATCTCAGCCTTTCCTGAATATGAAATTT GAAACAGATTACTTTGTCAAGATTGTCCCTTTTCCTTCCATTAAAAACGAAAGCAATTAT CACCCTTTCTTCTTTAGAACCCGCACCTGTGACCTGCTATTACAGCCGGACAACCTGGCC TGTAAACCCTTCTGGAAGCCTCGGAACCTCAACATCACCCAACATGGCTCAGACATGCAG GTGTCCTTCGACCACGCGCCACATACCTTCGGCTTCCGTTTCTTTTATCTTCACTACAAG CTCAAGCACGAAGGACTCTTCAAACGAAAGACCTGCAAACAGGAGCAAAATACAGAGACA ACCAGCTGCCTCCTTCAAAATGTATCTCCTGGGGATTATATAATTGAGCTGGTGGATGAC ------------AGAAAAGTGATGCATTATGCCTTA------------TCCCCATGGGCT GGGCCCATAGAG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 385-508, + strand, RNAz p=0.97679 | |
| 671-789, - strand, RNAz p=0.9348 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 385-508, + strand, RNAz p=0.97679 | |
| 671-789, - strand, RNAz p=0.9348 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of NM_017563, + |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 4-202, gnl|bosTau2|chr22 (33085350-33085157) | |
| 4-202, gnl|Hg17|chr3 (57174421-57174228) | |
| 4-202, gnl|Mm7|chr14 (24471800-24471997) | |
| 385-508, gnl|bosTau2|chr22 (33035223-33035100) | |
| 385-508, gnl|canFam2|chr20 (36287783-36287626) | |
| 385-508, gnl|danRer3|chrUn (124619695-124619856) | |
| 385-508, gnl|dasNov1|scaffold_7375 (14973-15108) | |
| 385-508, gnl|echTel1|scaffold_191377 (5729-5571) | |
| 385-508, gnl|fr1|chrUn (263470797-263470967) | |
| 385-508, gnl|galGal2|chr12 (8622988-8623132) | |
| 385-508, gnl|hg17|chr3 (57119251-57119408) | |
| 385-508, gnl|Hg17|chr3 (57119380-57119257) | |
| 385-508, gnl|loxAfr1|scaffold_158235 (209-366) | |
| 385-508, gnl|mm7|chr14 (24520296-24520143) | |
| 385-508, gnl|Mm7|chr14 (24520165-24520288) | |
| 385-508, gnl|monDom2|scaffold_76 (404219-404059) | |
| 385-508, gnl|oryCun1|scaffold_198160 (77689-77532) | |
| 385-508, gnl|panTro1|chr2 (58779801-58779958) | |
| 385-508, gnl|rheMac2|chr2 (79267313-79267156) | |
| 385-508, gnl|rn3|chr16 (2341264-2341108) | |
| 385-508, gnl|tetNig1|chrUn_random (5922433-5922562) | |
| 385-508, gnl|xenTro1|scaffold_585 (62635-62502) | |
| 671-823, gnl|bosTau2|chr22 (33032457-33032305) | |
| 671-823, gnl|Hg17|chr3 (57115076-57114924) | |
| 671-823, gnl|Mm7|chr14 (24524696-24524848) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 4-202, gnl|bosTau2|chr22 (33085350-33085157) | |
| 4-202, gnl|Hg17|chr3 (57174421-57174228) | |
| 4-202, gnl|Mm7|chr14 (24471800-24471997) | |
| 385-508, gnl|bosTau2|chr22 (33035223-33035100) | |
| 385-508, gnl|canFam2|chr20 (36287783-36287626) | |
| 385-508, gnl|danRer3|chrUn (124619695-124619856) | |
| 385-508, gnl|dasNov1|scaffold_7375 (14973-15108) | |
| 385-508, gnl|echTel1|scaffold_191377 (5729-5571) | |
| 385-508, gnl|fr1|chrUn (263470797-263470967) | |
| 385-508, gnl|galGal2|chr12 (8622988-8623132) | |
| 385-508, gnl|hg17|chr3 (57119251-57119408) | |
| 385-508, gnl|Hg17|chr3 (57119380-57119257) | |
| 385-508, gnl|loxAfr1|scaffold_158235 (209-366) | |
| 385-508, gnl|mm7|chr14 (24520296-24520143) | |
| 385-508, gnl|Mm7|chr14 (24520165-24520288) | |
| 385-508, gnl|monDom2|scaffold_76 (404219-404059) | |
| 385-508, gnl|oryCun1|scaffold_198160 (77689-77532) | |
| 385-508, gnl|panTro1|chr2 (58779801-58779958) | |
| 385-508, gnl|rheMac2|chr2 (79267313-79267156) | |
| 385-508, gnl|rn3|chr16 (2341264-2341108) | |
| 385-508, gnl|tetNig1|chrUn_random (5922433-5922562) | |
| 385-508, gnl|xenTro1|scaffold_585 (62635-62502) | |
| 671-823, gnl|bosTau2|chr22 (33032457-33032305) | |
| 671-823, gnl|Hg17|chr3 (57115076-57114924) | |
| 671-823, gnl|Mm7|chr14 (24524696-24524848) |