Non-Coding RNA Search

Ss1.1-Ova1-OVRM10116G08.5

Sequence:


               
               ATGTAGTCCTCTGGAAAGAGAACTAAAACTTGTAGGTGCCTGACTTACTGTTTTACTGCC
TGACATTTGCCAGGGACCACTTTTCTCAGTGGTGGAAGGGGGAGTGGAGAAAAGGTTTGC
ATTTGTGTCTCGGAAGTTGCAGAAAAACCCTACAGGCAGGGACACACCCACTTGGAAACC
AGGCTTCCCTGGAAGTGGGAGGGAACAGGAACTGGAGGTGCTCTCCTCCACAGGCAGGAG
TCAGCTAACAGCCTTCCCAGGTAGTGGGAGCATTCGCCTTGCACGGGAGCCATCGGAGAC
CAGTCTGGAGGCTTGCTTACCTGTGATGGTGCCCGGGAAGGTGGCATGTGGTGAGATGCT
TGCTGAGGACCACTGGGCACAACCAGGTCTGTGGAAACGTGCTCCGCCTCTCTCTCCTCT
ATGCATGTCAGCTCCTCCTGCTGAAAACAGCTAAGCCTGCTGTTTGGAGTTCTTAGAATC
TCAGCCCCAGAGGGACTTCCCTAGGGACAAACTGACCTCACATTGGGAACTTTATTTCCC
AGACCCTGGCAGGCTCTGTAGCCTCTGGACTGCCTGTTGNCACTGTTCTTAGGAAGCATG
AGTCTCTCCTATGCCAGCATCTGTCCACACTGAGAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGTAGTCCTCTGGAAAGAGAACTAAAACTTGTAGGTGCCTGACTTACTGTTTTACTGCC
TGACATTTGCCAGGGACCACTTTTCTCAGTGGTGGAAGGGGGAGTGGAGAAAAGGTTTGC
ATTTGTGTCTCGGAAGTTGCAGAAAAACCCTACAGGCAGGGACACACCCACTTGGAAACC
AGGCTTCCCTGGAAGTGGGAGGGAACAGGAACTGGAGGTGCTCTCCTCCACAGGCAGGAG
TCAGCTAACAGCCTTCCCAGGTAGTGGGAGCATTCGCCTTGCACGGGAGCCATCGGAGAC
CAGTCTGGAGGCTTGCTTACCTGTGATGGTGCCCGGGAAGGTGGCATGTGGTGAGATGCT
TGCTGAGGACCACTGGGCACAACCAGGTCTGTGGAAACGTGCTCCGCCTCTCTCTCCTCT
ATGCATGTCAGCTCCTCCTGCTGAAAACAGCTAAGCCTGCTGTTTGGAGTTCTTAGAATC
TCAGCCCCAGAGGGACTTCCCTAGGGACAAACTGACCTCACATTGGGAACTTTATTTCCC
AGACCCTGGCAGGCTCTGTAGCCTCTGGACTGCCTGTTGNCACTGTTCTTAGGAAGCATG
AGTCTCTCCTATGCCAGCATCTGTCCACACTGAGAG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               118-273, - strand, RNAz p=0.822866

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               118-273, - strand, RNAz p=0.822866

Aligned organism(s): 11 entry(ies)

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Aligned organism(s): 11 entry(ies)

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               1-324, gnl|bosTau2|chr1 (33164063-33163757)
               

               
               1-324, gnl|canFam2|chr33 (19313553-19313926)
               

               
               1-324, gnl|dasNov1|scaffold_2220 (99814-99434)
               

               
               1-324, gnl|echTel1|scaffold_325288 (15293-15648)
               

               
               1-324, gnl|hg17|chr3 (112796815-112797196)
               

               
               1-324, gnl|Hg17|chr3 (112797159-112796835)
               

               
               1-324, gnl|mm7|chr16 (45863340-45862963)
               

               
               1-324, gnl|Mm7|chr16 (45863001-45863319)
               

               
               1-324, gnl|oryCun1|scaffold_202018 (38861-38529)
               

               
               1-324, gnl|panTro1|chr2 (114385960-114386341)
               

               
               1-324, gnl|rheMac2|chr2 (31698960-31699341)

Aligned organism(s): 11 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-324, gnl|bosTau2|chr1 (33164063-33163757)
               

               
               1-324, gnl|canFam2|chr33 (19313553-19313926)
               

               
               1-324, gnl|dasNov1|scaffold_2220 (99814-99434)
               

               
               1-324, gnl|echTel1|scaffold_325288 (15293-15648)
               

               
               1-324, gnl|hg17|chr3 (112796815-112797196)
               

               
               1-324, gnl|Hg17|chr3 (112797159-112796835)
               

               
               1-324, gnl|mm7|chr16 (45863340-45862963)
               

               
               1-324, gnl|Mm7|chr16 (45863001-45863319)
               

               
               1-324, gnl|oryCun1|scaffold_202018 (38861-38529)
               

               
               1-324, gnl|panTro1|chr2 (114385960-114386341)
               

               
               1-324, gnl|rheMac2|chr2 (31698960-31699341)

	1-324, gnl\|bosTau2\|chr1 (33164063-33163757)
	1-324, gnl\|canFam2\|chr33 (19313553-19313926)
	1-324, gnl\|dasNov1\|scaffold_2220 (99814-99434)
	1-324, gnl\|echTel1\|scaffold_325288 (15293-15648)
	1-324, gnl\|hg17\|chr3 (112796815-112797196)
	1-324, gnl\|Hg17\|chr3 (112797159-112796835)
	1-324, gnl\|mm7\|chr16 (45863340-45862963)
	1-324, gnl\|Mm7\|chr16 (45863001-45863319)
	1-324, gnl\|oryCun1\|scaffold_202018 (38861-38529)
	1-324, gnl\|panTro1\|chr2 (114385960-114386341)
	1-324, gnl\|rheMac2\|chr2 (31698960-31699341)