Non-Coding RNA Search

Ss1.1-Ova1-OVRM10119A10.5

Sequence:


               
               AAGACAACAGCTGTGGTTCTGCGCCGGCGGGCAGAGCGGCGCGGGGAGCCCGAGCGGAGC
GAGCGTGGGGCCGTAGCTGTCTGCGATTGCCAGATGGGGACTGAGACCAAGGAGGTAATT
CCCAAGGAAGAAATTTCTGAAGAATCTGAGCCACGTGGGGCAATTTTAGACACATTTCCA
AAGGTGGTTTTCCAGGGTCACAAGTTTGGAGCAGCGTGTGAAGAAGCCACATTGGAGGGG
CCTTCCAGAGCACCCGCAGAAGAGGTTATGGAGCAGGTGGCTCCTGAGGAGAGGCACTTG
GCCTCAGGGTTGATCATCTTTAAGAAGTCACCCTCAAGCGAGGAAGACCAGGAGGATGAT
GAGGGCGAGCAAGCGTGCAGCCTCAGCCCAAACCCAGCTCTACCGCAGGGAGACGCGGCC
GCAGAGGCAGCTGGCACATTGGCTGCTTCTGGCCAAAACTTCATGCAGCATTTAGGACCT
AACAAAACGCATAGAAGTTCTGGGGGAGAAAAGCCTCATTCGTGTAAAGAATGTGGGAAA
GCTTTTAATCAGAACTCACATCTCATTCAACATATGCGAGTTCACAGTGGAGAGAAACCC
TTTGAATGCAAAGAATGTGGAAAAACATTCGGAACTAACTCAAGCCTTCGAAGGCATCTG
AGAATTCATGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGACAACAGCTGTGGTTCTGCGCCGGCGGGCAGAGCGGCGCGGGGAGCCCGAGCGGAGC
GAGCGTGGGGCCGTAGCTGTCTGCGATTGCCAGATGGGGACTGAGACCAAGGAGGTAATT
CCCAAGGAAGAAATTTCTGAAGAATCTGAGCCACGTGGGGCAATTTTAGACACATTTCCA
AAGGTGGTTTTCCAGGGTCACAAGTTTGGAGCAGCGTGTGAAGAAGCCACATTGGAGGGG
CCTTCCAGAGCACCCGCAGAAGAGGTTATGGAGCAGGTGGCTCCTGAGGAGAGGCACTTG
GCCTCAGGGTTGATCATCTTTAAGAAGTCACCCTCAAGCGAGGAAGACCAGGAGGATGAT
GAGGGCGAGCAAGCGTGCAGCCTCAGCCCAAACCCAGCTCTACCGCAGGGAGACGCGGCC
GCAGAGGCAGCTGGCACATTGGCTGCTTCTGGCCAAAACTTCATGCAGCATTTAGGACCT
AACAAAACGCATAGAAGTTCTGGGGGAGAAAAGCCTCATTCGTGTAAAGAATGTGGGAAA
GCTTTTAATCAGAACTCACATCTCATTCAACATATGCGAGTTCACAGTGGAGAGAAACCC
TTTGAATGCAAAGAATGTGGAAAAACATTCGGAACTAACTCAAGCCTTCGAAGGCATCTG
AGAATTCATGCT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               552-672, + strand, RNAz p=0.781115

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               552-672, + strand, RNAz p=0.781115

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               85-672, gnl|bosTau2|chr19 (14939556-14940155)
               

               
               85-672, gnl|Mm7|chr11 (70852782-70853351)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               85-672, gnl|bosTau2|chr19 (14939556-14940155)
               

               
               85-672, gnl|Mm7|chr11 (70852782-70853351)

	85-672, gnl\|bosTau2\|chr19 (14939556-14940155)
	85-672, gnl\|Mm7\|chr11 (70852782-70853351)