Non-Coding RNA Search

Ss1.1-Ova1-OVRM10122B07.5

Sequence:


               
               CTTTTTTTTTAAAAATCGCTGGGTCTGTTGAGCTCTGCTGGGCTGGGTGCCTTGCACCGT
GACTGAGACTGGAGGCAGACGGAAACAGCCACAGGGCAGACTGAGGTGGCAAACGAAAAT
CTGCCGGGATGTTCAGTCAGGGACCCAGGACCCCAGCTTCAGGCTGCTACTATCTAAATG
CCCTGACACCTGAGAGCCAGGAGATGTATTTGCGATTTGATCAGACTGCGAGGCGCTCTC
CTTACAGGATGAGCCGGATTCTAGCACGCCATCAGCTAGTGACTAAAATTCAACAAGAAA
TTGAGGCAAAGGAAGCATGCGACTGGCTCCGTGCTGCCGGGTTCCCGCAGTATGCTCAGT
TGTACGAGGACTCACAGTTTCCCATCAACATTGTGGCTGTCAAGAACGATCATGATTTTC
TTGAAAAGGACCTTGTAGAACCTCTTTACAGACGACTAAATACGTTGAACAAGTGTGCCT
CAATGAAACTTGATGTGAACTTCCAAAGGAAAAAGGTAGGCGCCCCTTACTACCACTGAC
TCGCAACCAAACTGACAGAAGCAGCTTATATTCACAGATGAAAAGCAACACAGACCTAAG
CAAAATTCTGAAGTGCCCACCCATCTATGTTGGTCCTCCAAATATCCCATCGTATCATAG
CTCTAAGTCCATTATAAACCTAGGCCGACGTCTTTTTATTCCAGTGTTTCATCTTGCTTT
TATCAGCAGGTTTGCATGCAGATGTCCACTGCCTCAGTCTTTACGATAATCTTTCAGAAA
TGTGTTTCGTTGTAAATATCCACTCCCTTTTAGACGCACTTCTCCACAGGGATTCCCCAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTTTTTTTTAAAAATCGCTGGGTCTGTTGAGCTCTGCTGGGCTGGGTGCCTTGCACCGT
GACTGAGACTGGAGGCAGACGGAAACAGCCACAGGGCAGACTGAGGTGGCAAACGAAAAT
CTGCCGGGATGTTCAGTCAGGGACCCAGGACCCCAGCTTCAGGCTGCTACTATCTAAATG
CCCTGACACCTGAGAGCCAGGAGATGTATTTGCGATTTGATCAGACTGCGAGGCGCTCTC
CTTACAGGATGAGCCGGATTCTAGCACGCCATCAGCTAGTGACTAAAATTCAACAAGAAA
TTGAGGCAAAGGAAGCATGCGACTGGCTCCGTGCTGCCGGGTTCCCGCAGTATGCTCAGT
TGTACGAGGACTCACAGTTTCCCATCAACATTGTGGCTGTCAAGAACGATCATGATTTTC
TTGAAAAGGACCTTGTAGAACCTCTTTACAGACGACTAAATACGTTGAACAAGTGTGCCT
CAATGAAACTTGATGTGAACTTCCAAAGGAAAAAGGTAGGCGCCCCTTACTACCACTGAC
TCGCAACCAAACTGACAGAAGCAGCTTATATTCACAGATGAAAAGCAACACAGACCTAAG
CAAAATTCTGAAGTGCCCACCCATCTATGTTGGTCCTCCAAATATCCCATCGTATCATAG
CTCTAAGTCCATTATAAACCTAGGCCGACGTCTTTTTATTCCAGTGTTTCATCTTGCTTT
TATCAGCAGGTTTGCATGCAGATGTCCACTGCCTCAGTCTTTACGATAATCTTTCAGAAA
TGTGTTTCGTTGTAAATATCCACTCCCTTTTAGACGCACTTCTCCACAGGGATTCCCCAG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|29465678|gb|AAL91651.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|29465678|gb|AAL91651.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               41-159, + strand, RNAz p=0.98352

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               41-159, + strand, RNAz p=0.98352

Aligned organism(s): 18 entry(ies)

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Aligned organism(s): 18 entry(ies)

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               2-297, gnl|bosTau2|chr4 (66493501-66493797)
               

               
               2-297, gnl|canFam2|chr25 (9925064-9924689)
               

               
               2-297, gnl|dasNov1|scaffold_202270 (823-445)
               

               
               2-297, gnl|echTel1|scaffold_169413 (422-58)
               

               
               2-297, gnl|galGal2|chr1 (166153926-166153554)
               

               
               2-297, gnl|hg17|chr13 (32757586-32757969)
               

               
               2-297, gnl|Hg17|chr13 (32757897-32757607)
               

               
               2-297, gnl|mm7|chr5 (150122395-150122770)
               

               
               2-297, gnl|Mm7|chr5 (150122696-150122416)
               

               
               2-297, gnl|monDom2|scaffold_15 (43897672-43898124)
               

               
               2-297, gnl|oryCun1|scaffold_215398 (19347-18966)
               

               
               2-297, gnl|panTro1|chr14 (31959135-31959514)
               

               
               2-297, gnl|rheMac2|chr17 (12673397-12673780)
               

               
               2-297, gnl|rn3|chr12 (3502698-3502318)
               

               
               2-297, gnl|xenTro1|scaffold_384 (838967-838598)
               


               
               443-825, gnl|bosTau2|chr11 (43848078-43848466)
               

               
               443-825, gnl|Hg17|chr13 (32614519-32613919)
               

               
               443-825, gnl|Mm7|chr5 (150005863-150005100)

Aligned organism(s): 18 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-297, gnl|bosTau2|chr4 (66493501-66493797)
               

               
               2-297, gnl|canFam2|chr25 (9925064-9924689)
               

               
               2-297, gnl|dasNov1|scaffold_202270 (823-445)
               

               
               2-297, gnl|echTel1|scaffold_169413 (422-58)
               

               
               2-297, gnl|galGal2|chr1 (166153926-166153554)
               

               
               2-297, gnl|hg17|chr13 (32757586-32757969)
               

               
               2-297, gnl|Hg17|chr13 (32757897-32757607)
               

               
               2-297, gnl|mm7|chr5 (150122395-150122770)
               

               
               2-297, gnl|Mm7|chr5 (150122696-150122416)
               

               
               2-297, gnl|monDom2|scaffold_15 (43897672-43898124)
               

               
               2-297, gnl|oryCun1|scaffold_215398 (19347-18966)
               

               
               2-297, gnl|panTro1|chr14 (31959135-31959514)
               

               
               2-297, gnl|rheMac2|chr17 (12673397-12673780)
               

               
               2-297, gnl|rn3|chr12 (3502698-3502318)
               

               
               2-297, gnl|xenTro1|scaffold_384 (838967-838598)
               


               
               443-825, gnl|bosTau2|chr11 (43848078-43848466)
               

               
               443-825, gnl|Hg17|chr13 (32614519-32613919)
               

               
               443-825, gnl|Mm7|chr5 (150005863-150005100)

	2-297, gnl\|bosTau2\|chr4 (66493501-66493797)
	2-297, gnl\|canFam2\|chr25 (9925064-9924689)
	2-297, gnl\|dasNov1\|scaffold_202270 (823-445)
	2-297, gnl\|echTel1\|scaffold_169413 (422-58)
	2-297, gnl\|galGal2\|chr1 (166153926-166153554)
	2-297, gnl\|hg17\|chr13 (32757586-32757969)
	2-297, gnl\|Hg17\|chr13 (32757897-32757607)
	2-297, gnl\|mm7\|chr5 (150122395-150122770)
	2-297, gnl\|Mm7\|chr5 (150122696-150122416)
	2-297, gnl\|monDom2\|scaffold_15 (43897672-43898124)
	2-297, gnl\|oryCun1\|scaffold_215398 (19347-18966)
	2-297, gnl\|panTro1\|chr14 (31959135-31959514)
	2-297, gnl\|rheMac2\|chr17 (12673397-12673780)
	2-297, gnl\|rn3\|chr12 (3502698-3502318)
	2-297, gnl\|xenTro1\|scaffold_384 (838967-838598)

	443-825, gnl\|bosTau2\|chr11 (43848078-43848466)
	443-825, gnl\|Hg17\|chr13 (32614519-32613919)
	443-825, gnl\|Mm7\|chr5 (150005863-150005100)