Non-Coding RNA Search

Ss1.1-Ova1-OVRM10130H01.5

Sequence:


               
               TGGACACTCACTAGAGGGGAGCACGCGCCGCCGCAGTAGCGAGGGTCCTGCCGCCTGGAA
GGAAGGGGCTTCATCCGCGCGAGCCTCTGGTGCCCCAGGCCGAGCGAGCAGCTGGTTGGT
GCTTAGACTCCTCCTGCGGCGGCCGCTCCCTCCACGTGCTTTCGACGACATGGAGCTGGA
GGAGCTGGGGGTCCGAGAGGAGTGCGGTGTGTTCGGGTGCATTGCCTCAGGAGAGTGGCC
CACGCAGCTGGATGTGCCGCACGTGATCACTCTGGGACTTGTAGGGCTGCAGCACCGGGG
CCAGGAGAGTGCTGGTATTGTGACCAGTGATGGGAGTTTGATACCAACATTCAAAACACA
CAAGGGAATGGGTCTTGTAAATCACGTCTTTACTGAAGACAATTTGAAGAAATTATACAC
TTCAAACCTTGGCATTGGGCACACAAGGTACGCCACCACAGGAAACTGTGAACTAGAAAA
TTGCCAGCCCTTTGTTGTTGAGACGCTTCATGGGAAAATAGCTGTAGCGCATAATGGTGA
ATTGGTAAACGCTGCTCGTTTGAGGAAAAAGCTTCTGCGCCATGGTATTGGTCTGTCCAC
AAGCTCCGATAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGACACTCACTAGAGGGGAGCACGCGCCGCCGCAGTAGCGAGGGTCCTGCCGCCTGGAA
GGAAGGGGCTTCATCCGCGCGAGCCTCTGGTGCCCCAGGCCGAGCGAGCAGCTGGTTGGT
GCTTAGACTCCTCCTGCGGCGGCCGCTCCCTCCACGTGCTTTCGACGACATGGAGCTGGA
GGAGCTGGGGGTCCGAGAGGAGTGCGGTGTGTTCGGGTGCATTGCCTCAGGAGAGTGGCC
CACGCAGCTGGATGTGCCGCACGTGATCACTCTGGGACTTGTAGGGCTGCAGCACCGGGG
CCAGGAGAGTGCTGGTATTGTGACCAGTGATGGGAGTTTGATACCAACATTCAAAACACA
CAAGGGAATGGGTCTTGTAAATCACGTCTTTACTGAAGACAATTTGAAGAAATTATACAC
TTCAAACCTTGGCATTGGGCACACAAGGTACGCCACCACAGGAAACTGTGAACTAGAAAA
TTGCCAGCCCTTTGTTGTTGAGACGCTTCATGGGAAAATAGCTGTAGCGCATAATGGTGA
ATTGGTAAACGCTGCTCGTTTGAGGAAAAAGCTTCTGCGCCATGGTATTGGTCTGTCCAC
AAGCTCCGATAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|56207701|emb|CAI21322.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|56207701|emb|CAI21322.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               167-298, - strand, RNAz p=0.861565

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               167-298, - strand, RNAz p=0.861565

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               13-298, gnl|bosTau2|chr6 (35344989-35344699)
               

               
               13-298, gnl|canFam2|chrX (63815557-63815755)
               

               
               13-298, gnl|dasNov1|scaffold_59749 (3476-3665)
               

               
               13-298, gnl|echTel1|scaffold_276805 (42893-43085)
               

               
               13-298, gnl|Hg17|chr4 (57142731-57142443)
               

               
               13-298, gnl|hg17|chrX (77761409-77761604)
               

               
               13-298, gnl|loxAfr1|scaffold_9792 (39683-39493)
               

               
               13-298, gnl|Mm7|chr5 (76882785-76882499)
               

               
               13-298, gnl|mm7|chrX (102213152-102213332)
               

               
               13-298, gnl|monDom2|scaffold_33 (23554948-23554739)
               

               
               13-298, gnl|oryCun1|scaffold_203159 (6414-6553)
               

               
               13-298, gnl|panTro1|chrX (80245492-80245687)
               

               
               13-298, gnl|rheMac2|chrX (77441300-77441495)
               

               
               13-298, gnl|rn3|chrX (95214933-95215113)
               


               
               361-571, gnl|bosTau2|chr6 (35367423-35367633)
               

               
               361-571, gnl|Hg17|chr4 (57113799-57113589)
               

               
               361-571, gnl|Mm7|chr5 (76857427-76857217)

Aligned organism(s): 17 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               13-298, gnl|bosTau2|chr6 (35344989-35344699)
               

               
               13-298, gnl|canFam2|chrX (63815557-63815755)
               

               
               13-298, gnl|dasNov1|scaffold_59749 (3476-3665)
               

               
               13-298, gnl|echTel1|scaffold_276805 (42893-43085)
               

               
               13-298, gnl|Hg17|chr4 (57142731-57142443)
               

               
               13-298, gnl|hg17|chrX (77761409-77761604)
               

               
               13-298, gnl|loxAfr1|scaffold_9792 (39683-39493)
               

               
               13-298, gnl|Mm7|chr5 (76882785-76882499)
               

               
               13-298, gnl|mm7|chrX (102213152-102213332)
               

               
               13-298, gnl|monDom2|scaffold_33 (23554948-23554739)
               

               
               13-298, gnl|oryCun1|scaffold_203159 (6414-6553)
               

               
               13-298, gnl|panTro1|chrX (80245492-80245687)
               

               
               13-298, gnl|rheMac2|chrX (77441300-77441495)
               

               
               13-298, gnl|rn3|chrX (95214933-95215113)
               


               
               361-571, gnl|bosTau2|chr6 (35367423-35367633)
               

               
               361-571, gnl|Hg17|chr4 (57113799-57113589)
               

               
               361-571, gnl|Mm7|chr5 (76857427-76857217)

	13-298, gnl\|bosTau2\|chr6 (35344989-35344699)
	13-298, gnl\|canFam2\|chrX (63815557-63815755)
	13-298, gnl\|dasNov1\|scaffold_59749 (3476-3665)
	13-298, gnl\|echTel1\|scaffold_276805 (42893-43085)
	13-298, gnl\|Hg17\|chr4 (57142731-57142443)
	13-298, gnl\|hg17\|chrX (77761409-77761604)
	13-298, gnl\|loxAfr1\|scaffold_9792 (39683-39493)
	13-298, gnl\|Mm7\|chr5 (76882785-76882499)
	13-298, gnl\|mm7\|chrX (102213152-102213332)
	13-298, gnl\|monDom2\|scaffold_33 (23554948-23554739)
	13-298, gnl\|oryCun1\|scaffold_203159 (6414-6553)
	13-298, gnl\|panTro1\|chrX (80245492-80245687)
	13-298, gnl\|rheMac2\|chrX (77441300-77441495)
	13-298, gnl\|rn3\|chrX (95214933-95215113)

	361-571, gnl\|bosTau2\|chr6 (35367423-35367633)
	361-571, gnl\|Hg17\|chr4 (57113799-57113589)
	361-571, gnl\|Mm7\|chr5 (76857427-76857217)