Non-Coding RNA Search

Ss1.1-Ova1-OVRM10137C01.5

Sequence:


               
               GGGGATGGGCTATGGCAGCCGAGCCCTGCAGCTGCTGCAGATGTACTACGAAGGCAGATT
CCCTTGTCTCGAGGAGAAGGCCCTCGAGACGTCACAAGAGATTCACACCGTCAGCAGTGA
GGCCGTCAGCTTGCTGGAAGAGGTTGTCACTCCCCGGAAGGACCTGCCTCCCTTGCTTCT
CAAACTGAACGAGAGGCCCGCCGAGCGCCTGGATTACCTGGGGGTGTCCTACGGCTTGAC
CCCCAGGCTCCTCAAATTCTGGAAACGAGCTGGGTTTGTTCCTGTTTATCTGAGACAGAC
CCCGAATGACCTGACTGGAGAGCACTCATGCATCATGGTGAAGACGCTGACGGACGAGGA
TGAGGCCGACCGGGGTGCCTGGCTCTCAGCTTTTTGGAAGGATTTCCGAAGGCGGTTCCT
GGCCCTGCTGTCCTACCAGTTCAGTGCCTTCTCTCCTCCCCTGGCTCTGAACATCCTTCA
GAACAGAAACATCGGGAAACCCACGCAGCCAGCCCTGTGCCGGGAGGAGCTGGAAGCGCT
CTTCCTCCCCTATGACCTGAAGCGGCTGGAGATGTACTCACAGACCATGGTGGACTATCA
CCTCATCATGGACCTGATCCCGGCCATCTCCCGGCTGTACTTCCCTGACCAGCTGGGGGA
CCTGGCCCTCTCTGCTGCCCAGTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGGATGGGCTATGGCAGCCGAGCCCTGCAGCTGCTGCAGATGTACTACGAAGGCAGATT
CCCTTGTCTCGAGGAGAAGGCCCTCGAGACGTCACAAGAGATTCACACCGTCAGCAGTGA
GGCCGTCAGCTTGCTGGAAGAGGTTGTCACTCCCCGGAAGGACCTGCCTCCCTTGCTTCT
CAAACTGAACGAGAGGCCCGCCGAGCGCCTGGATTACCTGGGGGTGTCCTACGGCTTGAC
CCCCAGGCTCCTCAAATTCTGGAAACGAGCTGGGTTTGTTCCTGTTTATCTGAGACAGAC
CCCGAATGACCTGACTGGAGAGCACTCATGCATCATGGTGAAGACGCTGACGGACGAGGA
TGAGGCCGACCGGGGTGCCTGGCTCTCAGCTTTTTGGAAGGATTTCCGAAGGCGGTTCCT
GGCCCTGCTGTCCTACCAGTTCAGTGCCTTCTCTCCTCCCCTGGCTCTGAACATCCTTCA
GAACAGAAACATCGGGAAACCCACGCAGCCAGCCCTGTGCCGGGAGGAGCTGGAAGCGCT
CTTCCTCCCCTATGACCTGAAGCGGCTGGAGATGTACTCACAGACCATGGTGGACTATCA
CCTCATCATGGACCTGATCCCGGCCATCTCCCGGCTGTACTTCCCTGACCAGCTGGGGGA
CCTGGCCCTCTCTGCTGCCCAGTC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|37360518|dbj|BAC98237.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|37360518|dbj|BAC98237.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               138-255, - strand, RNAz p=0.631896

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               138-255, - strand, RNAz p=0.631896

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               120-255, gnl|bosTau2|chr15 (39074653-39074788)
               

               
               120-255, gnl|Hg17|chr11 (34114763-34114898)
               

               
               120-255, gnl|Mm7|chr2 (103581432-103581297)
               


               
               509-684, gnl|bosTau2|chr15 (39079106-39079281)
               

               
               509-684, gnl|Hg17|chr11 (34118519-34118694)
               

               
               509-684, gnl|Mm7|chr2 (103577679-103577504)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               120-255, gnl|bosTau2|chr15 (39074653-39074788)
               

               
               120-255, gnl|Hg17|chr11 (34114763-34114898)
               

               
               120-255, gnl|Mm7|chr2 (103581432-103581297)
               


               
               509-684, gnl|bosTau2|chr15 (39079106-39079281)
               

               
               509-684, gnl|Hg17|chr11 (34118519-34118694)
               

               
               509-684, gnl|Mm7|chr2 (103577679-103577504)

	120-255, gnl\|bosTau2\|chr15 (39074653-39074788)
	120-255, gnl\|Hg17\|chr11 (34114763-34114898)
	120-255, gnl\|Mm7\|chr2 (103581432-103581297)

	509-684, gnl\|bosTau2\|chr15 (39079106-39079281)
	509-684, gnl\|Hg17\|chr11 (34118519-34118694)
	509-684, gnl\|Mm7\|chr2 (103577679-103577504)