Non-Coding RNA Search

Ss1.1-Ova1-OVRM10147A07.5

Sequence:


               
               TCTGTATGCCATAAATACACCCCCCCCCCAAAAAAAGCTATAAAGAACATTTCATGTCAA
TATAGGAAAGAAAAAAAAAAAGAAAGAAAAGAGGCTGGGGAAGCAGGAGCAGCGAAGCCC
AGCGCCCGCTGTCCCGCCCAGAGACCACTAACCCGCTGCCCTCTCTTCTCTCTCGTCTCT
TGCATGACGCCCCAGAGATGTATGTACGCATGTATTTGTGTCTCTGTGCTGGCGCAAGGC
CAGTGTCTGTATCCAGGGCTCCTTCTCTGAGTGAGGCAAGGGAATTGATTGCAACCCTTG
TCTCCGTGTGGCTCCCCCGTCCGTGCAAACGTGCCTGTCTGTGCTTGTGCACGGAAGCTG
GTGTGTGTGTGCATGTGGGTGTGTGCATGCAGGGGGAGGCGACGCTGCCCCTTCCTTCCA
TGGAAGACCTCAAGGGCTCCTCAGGCCTCCCTGGACCCCTGCCCCTCCCCTCCCCTGCAA
GTGCCCCCGCAGAAGCACCTCCAGGCTAGAGAGAATTGGGAAGGCCCGAGTCTCCCCTCA
GCCTCCGTCTGGAAGACTTCCACGGAAGGGGTGACAGGGAGAGAGAGACGGGTCCAGACC
CACTACCCCGAGTCACCTCTGCCCTGGAGGCCTCTGTGCTTTCATCTTTCGTGGAAGCCT
AGGTCCCCTGGAGCTCTCCTCTTACACCTGCCCCTCCATCCAGGGCTCGGTAAATACAAG
GGTTGCGTTGTTACTTCGGCACAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTGTATGCCATAAATACACCCCCCCCCCAAAAAAAGCTATAAAGAACATTTCATGTCAA
TATAGGAAAGAAAAAAAAAAAGAAAGAAAAGAGGCTGGGGAAGCAGGAGCAGCGAAGCCC
AGCGCCCGCTGTCCCGCCCAGAGACCACTAACCCGCTGCCCTCTCTTCTCTCTCGTCTCT
TGCATGACGCCCCAGAGATGTATGTACGCATGTATTTGTGTCTCTGTGCTGGCGCAAGGC
CAGTGTCTGTATCCAGGGCTCCTTCTCTGAGTGAGGCAAGGGAATTGATTGCAACCCTTG
TCTCCGTGTGGCTCCCCCGTCCGTGCAAACGTGCCTGTCTGTGCTTGTGCACGGAAGCTG
GTGTGTGTGTGCATGTGGGTGTGTGCATGCAGGGGGAGGCGACGCTGCCCCTTCCTTCCA
TGGAAGACCTCAAGGGCTCCTCAGGCCTCCCTGGACCCCTGCCCCTCCCCTCCCCTGCAA
GTGCCCCCGCAGAAGCACCTCCAGGCTAGAGAGAATTGGGAAGGCCCGAGTCTCCCCTCA
GCCTCCGTCTGGAAGACTTCCACGGAAGGGGTGACAGGGAGAGAGAGACGGGTCCAGACC
CACTACCCCGAGTCACCTCTGCCCTGGAGGCCTCTGTGCTTTCATCTTTCGTGGAAGCCT
AGGTCCCCTGGAGCTCTCCTCTTACACCTGCCCCTCCATCCAGGGCTCGGTAAATACAAG
GGTTGCGTTGTTACTTCGGCACAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               69-173, - strand, RNAz p=0.920503
               

               
               342-438, + strand, RNAz p=0.949404

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               69-173, - strand, RNAz p=0.920503
               

               
               342-438, + strand, RNAz p=0.949404

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               69-683, gnl|bosTau2|chr12 (48349571-48350161)
               

               
               69-683, gnl|Hg17|chr1 (53451356-53450682)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               69-683, gnl|bosTau2|chr12 (48349571-48350161)
               

               
               69-683, gnl|Hg17|chr1 (53451356-53450682)

	69-173, - strand, RNAz p=0.920503
	342-438, + strand, RNAz p=0.949404

	69-683, gnl\|bosTau2\|chr12 (48349571-48350161)
	69-683, gnl\|Hg17\|chr1 (53451356-53450682)