Non-Coding RNA Search

Ss1.1-Ova1-OVRM10147G03.5

Sequence:


               
               TTTTTTTTTTTTTTTTTTAAAATATGTCATAAATATACTGGCTTTATTGCTATAAAAACT
GTACATGCTTGTTACTGTTATTTGCGAAATGCAGACAAATACTGCAAAGATGTGCAAAAG
GTCTGAAATCCCACTTGTTCATGTTTTGAGTGGTACTGGGCTCTCGCTATACGCACGTCA
GGGCCTTGAATCAGGCAGACATGGAAGGTGGTGGTTTTCTTTCAACAGTGCTGTCAGCTA
GTAGAGGCTGGTCAGTCATCTCAGGTGAGAAGTACTCAGGGTTCTCACCCGGAGTGTGAT
CTTACCATCCATGCTTATAGACCATGGGTGTCTGCAGCCCTCAGATGGCACATCTGTCTG
ATGTTAGAACCCCACCCCCATGGAGCATCTGAAATGTAGACGTTGGAGCAGACAGGGTGG
CCATGCAGTTCCAGCCTCCAGGTTTCCCTGCCCTGTCCCTACCCCATCTTTCCTCATCCT
CAGGCGCAGTAACAGCATCTCCAAGTCCCCTGGTCCCAGCTCCCCAAAGGAGCCCCTCCT
GCTCAGCCGTGACATCAGCCGCTCCGAATCCCTGCGATGCTCCAGTAGCCGCTCGCAGCA
GATCTTCCGGCCATGTGACCTGATCCACGGGGAGGTCCTGGGGAAGGGCTTCTTTGGGCA
GGCCATCAAGGTGAGCACAGGTAGTGGCTGCTCTGCCCCTCTGCTCCCTCACTTTCTCGT
TACCTAGCCTCCCCTGACGTCCAGCAAGACACCCAGCCTCCCTCCTGGTTGGAGGTGATG
GTGTGAGGCCCCGACCCCTGTCCTCACTGAGGGCAGTGTGGCTGCTGACGTGAGCTTGGT
GGACCTGGAACCCCGGGTGGGGACCTTGCCTGAGACCTCCCACCTCCAGTCAGTGGGTGT
TTTTAGGTGCCCAGAGGCCTCGGTGCTGGGAGTGGCTCCTGCCTCCCTGCTGAACAGTCT
CAGGGACTAACCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCCTCCTCCTCC
TCCTCCTCTGCTGAGAGCTGGGAGGGGGGGTCAGGTAAGCCATGTGTCTCAGCCTTCGGG
GCAGTGGGGCTGAGAGCTCGCTCCTGACCCAGCCAGCTCCCTGGTGCATGTCTGTGGCAC
TGACCTTCCTGCCCTGAGATTCCTGTTCCCCCACAGAACTGGCGCCTGTGTCAGATGACC
AGAGCCCCTGCTTGGCTTGGCAGCGTCCCCTCCTGCCTCCTCCCACACATCCCTTTTCTG
GGTTCTCGCCTCTCCTCTGTGCATGCCCAGCTCTCCAGGGAGGAGGTGTGCTCCCCTCTG
AGTCCCCTGTGGCCCACGCTGTGTCTTCCGCATATGGACTCTGTCAGTCTGATCCAGCTG
ATTACTTCAGTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTTTTTTTAAAATATGTCATAAATATACTGGCTTTATTGCTATAAAAACT
GTACATGCTTGTTACTGTTATTTGCGAAATGCAGACAAATACTGCAAAGATGTGCAAAAG
GTCTGAAATCCCACTTGTTCATGTTTTGAGTGGTACTGGGCTCTCGCTATACGCACGTCA
GGGCCTTGAATCAGGCAGACATGGAAGGTGGTGGTTTTCTTTCAACAGTGCTGTCAGCTA
GTAGAGGCTGGTCAGTCATCTCAGGTGAGAAGTACTCAGGGTTCTCACCCGGAGTGTGAT
CTTACCATCCATGCTTATAGACCATGGGTGTCTGCAGCCCTCAGATGGCACATCTGTCTG
ATGTTAGAACCCCACCCCCATGGAGCATCTGAAATGTAGACGTTGGAGCAGACAGGGTGG
CCATGCAGTTCCAGCCTCCAGGTTTCCCTGCCCTGTCCCTACCCCATCTTTCCTCATCCT
CAGGCGCAGTAACAGCATCTCCAAGTCCCCTGGTCCCAGCTCCCCAAAGGAGCCCCTCCT
GCTCAGCCGTGACATCAGCCGCTCCGAATCCCTGCGATGCTCCAGTAGCCGCTCGCAGCA
GATCTTCCGGCCATGTGACCTGATCCACGGGGAGGTCCTGGGGAAGGGCTTCTTTGGGCA
GGCCATCAAGGTGAGCACAGGTAGTGGCTGCTCTGCCCCTCTGCTCCCTCACTTTCTCGT
TACCTAGCCTCCCCTGACGTCCAGCAAGACACCCAGCCTCCCTCCTGGTTGGAGGTGATG
GTGTGAGGCCCCGACCCCTGTCCTCACTGAGGGCAGTGTGGCTGCTGACGTGAGCTTGGT
GGACCTGGAACCCCGGGTGGGGACCTTGCCTGAGACCTCCCACCTCCAGTCAGTGGGTGT
TTTTAGGTGCCCAGAGGCCTCGGTGCTGGGAGTGGCTCCTGCCTCCCTGCTGAACAGTCT
CAGGGACTAACCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCCTCCTCCTCC
TCCTCCTCTGCTGAGAGCTGGGAGGGGGGGTCAGGTAAGCCATGTGTCTCAGCCTTCGGG
GCAGTGGGGCTGAGAGCTCGCTCCTGACCCAGCCAGCTCCCTGGTGCATGTCTGTGGCAC
TGACCTTCCTGCCCTGAGATTCCTGTTCCCCCACAGAACTGGCGCCTGTGTCAGATGACC
AGAGCCCCTGCTTGGCTTGGCAGCGTCCCCTCCTGCCTCCTCCCACACATCCCTTTTCTG
GGTTCTCGCCTCTCCTCTGTGCATGCCCAGCTCTCCAGGGAGGAGGTGTGCTCCCCTCTG
AGTCCCCTGTGGCCCACGCTGTGTCTTCCGCATATGGACTCTGTCAGTCTGATCCAGCTG
ATTACTTCAGTG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|22535931|gb|AAN01124.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|22535931|gb|AAN01124.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               998-1155, + strand, RNAz p=0.87158

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               998-1155, + strand, RNAz p=0.87158

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               16-451, gnl|bosTau2|chr17 (44150193-44149768)
               

               
               16-451, gnl|Hg17|chr22 (29985059-29986435)
               

               
               16-451, gnl|Mm7|chr11 (3306004-3305509)
               


               
               471-704, gnl|bosTau2|chr17 (44149714-44149482)
               

               
               471-704, gnl|Hg17|chr22 (29986484-29986714)
               

               
               471-704, gnl|Mm7|chr11 (3305469-3305246)
               


               
               998-1390, gnl|bosTau2|chr17 (44149266-44148880)
               

               
               998-1390, gnl|Hg17|chr22 (29987035-29987420)
               

               
               998-1390, gnl|Mm7|chr11 (3304953-3304486)

Aligned organism(s): 9 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               16-451, gnl|bosTau2|chr17 (44150193-44149768)
               

               
               16-451, gnl|Hg17|chr22 (29985059-29986435)
               

               
               16-451, gnl|Mm7|chr11 (3306004-3305509)
               


               
               471-704, gnl|bosTau2|chr17 (44149714-44149482)
               

               
               471-704, gnl|Hg17|chr22 (29986484-29986714)
               

               
               471-704, gnl|Mm7|chr11 (3305469-3305246)
               


               
               998-1390, gnl|bosTau2|chr17 (44149266-44148880)
               

               
               998-1390, gnl|Hg17|chr22 (29987035-29987420)
               

               
               998-1390, gnl|Mm7|chr11 (3304953-3304486)

	16-451, gnl\|bosTau2\|chr17 (44150193-44149768)
	16-451, gnl\|Hg17\|chr22 (29985059-29986435)
	16-451, gnl\|Mm7\|chr11 (3306004-3305509)

	471-704, gnl\|bosTau2\|chr17 (44149714-44149482)
	471-704, gnl\|Hg17\|chr22 (29986484-29986714)
	471-704, gnl\|Mm7\|chr11 (3305469-3305246)

	998-1390, gnl\|bosTau2\|chr17 (44149266-44148880)
	998-1390, gnl\|Hg17\|chr22 (29987035-29987420)
	998-1390, gnl\|Mm7\|chr11 (3304953-3304486)