Non-Coding RNA Search

Ss1.1-Ova1-OVRM10148E02.5

Sequence:


               
               AGCAGCGATCGGAGATGGATGTCTCTCTTTGCCCAGCCAAGTGTAGTTTCTGGCGGATTT
TCTTGCTGGGAAGCGTCTGGCTGGACTATGTGGGCTCCGTGCTGGCTTGCCCTGCAAATT
GTGTCTGCAGCAAGACTGAGATCAATTGCCGGCGGCCGGACGATGGGAACCTCTTCCCCC
TCCTGGAAGGGCAGGATTCAGGGAACAGCAATGGGAATGCCAGCATCAACATCACGGACA
TCTCAAGGAATATCACTTCCATACACATAGAGAACTGGCGCGGTCTGCACACGCTCAACG
CTGTGGACATGGAGCTCTACACCGGCCTCCAGAAGCTGACCATCAAGAACTCAGGACTTC
GGAGCATCCAGCCCAGAGCCTTTGCCAAGAACCCCCACCTGCGCTACATAAACCTGTCGA
GTAACCGGCTCACCACACTCTCATGGCAGCTCTTCCAGACGCTGAGTCTTCGGGAATTGA
GATTGGAGCAGAACTTCTTCAACTGCAGCTGTGACATCCGCTGGATGCAGCTGTGGCAGG
AGCAGGGGGAGGCCAAGCTGAACAGCCAGAGCCTCTATTGCATCAGTGCCGATGGCTCCC
AGCTCCCCCTCTTCCGCATGAACATTAGCCAGTGTGACCTTCCTGAGATCAGTGTGAGCC
ACGTCAATCTGACCGTTCGGGAGGGTGACAATGCTGTTGTCACCTGCAATGGCTCTGGAT
CACCCCTGCCCGACGTGGACTGGATCGTCACTGGACTGCAGTCCATCAACACCCACCAGA
CAAATCTGAATTGGACCAACGTACACGCCATCAACCTGACACTGGTCAATGTGACGAGTG
AGGACAACGGCTTCACCCTGACGTGCATTGCAGAGAACGTGGTGGGCATGAGCAATGCCA
GCGTCGCCCTCACTGTTCACTACCCCCCACGAGTGGTGAGCCTGGAGGAGCCAGAGCTGC
GCCTGGAACACTGCATCGAGTTTGTGGTGCGTGGCAACCCGCCGCCCACGCTGCACTGGC
TGCACAACGGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCAGCGATCGGAGATGGATGTCTCTCTTTGCCCAGCCAAGTGTAGTTTCTGGCGGATTT
TCTTGCTGGGAAGCGTCTGGCTGGACTATGTGGGCTCCGTGCTGGCTTGCCCTGCAAATT
GTGTCTGCAGCAAGACTGAGATCAATTGCCGGCGGCCGGACGATGGGAACCTCTTCCCCC
TCCTGGAAGGGCAGGATTCAGGGAACAGCAATGGGAATGCCAGCATCAACATCACGGACA
TCTCAAGGAATATCACTTCCATACACATAGAGAACTGGCGCGGTCTGCACACGCTCAACG
CTGTGGACATGGAGCTCTACACCGGCCTCCAGAAGCTGACCATCAAGAACTCAGGACTTC
GGAGCATCCAGCCCAGAGCCTTTGCCAAGAACCCCCACCTGCGCTACATAAACCTGTCGA
GTAACCGGCTCACCACACTCTCATGGCAGCTCTTCCAGACGCTGAGTCTTCGGGAATTGA
GATTGGAGCAGAACTTCTTCAACTGCAGCTGTGACATCCGCTGGATGCAGCTGTGGCAGG
AGCAGGGGGAGGCCAAGCTGAACAGCCAGAGCCTCTATTGCATCAGTGCCGATGGCTCCC
AGCTCCCCCTCTTCCGCATGAACATTAGCCAGTGTGACCTTCCTGAGATCAGTGTGAGCC
ACGTCAATCTGACCGTTCGGGAGGGTGACAATGCTGTTGTCACCTGCAATGGCTCTGGAT
CACCCCTGCCCGACGTGGACTGGATCGTCACTGGACTGCAGTCCATCAACACCCACCAGA
CAAATCTGAATTGGACCAACGTACACGCCATCAACCTGACACTGGTCAATGTGACGAGTG
AGGACAACGGCTTCACCCTGACGTGCATTGCAGAGAACGTGGTGGGCATGAGCAATGCCA
GCGTCGCCCTCACTGTTCACTACCCCCCACGAGTGGTGAGCCTGGAGGAGCCAGAGCTGC
GCCTGGAACACTGCATCGAGTTTGTGGTGCGTGGCAACCCGCCGCCCACGCTGCACTGGC
TGCACAACGGGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61874850|ref|XP_592957.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61874850|ref|XP_592957.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-120, + strand, RNAz p=0.780404

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-120, + strand, RNAz p=0.780404

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-262, gnl|bosTau2|chr21 (14342530-14342269)
               

               
               1-262, gnl|Hg17|chr15 (86600402-86600141)
               

               
               1-262, gnl|Mm7|chr7 (74438323-74438062)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-262, gnl|bosTau2|chr21 (14342530-14342269)
               

               
               1-262, gnl|Hg17|chr15 (86600402-86600141)
               

               
               1-262, gnl|Mm7|chr7 (74438323-74438062)

	1-262, gnl\|bosTau2\|chr21 (14342530-14342269)
	1-262, gnl\|Hg17\|chr15 (86600402-86600141)
	1-262, gnl\|Mm7\|chr7 (74438323-74438062)