Non-Coding RNA Search

Ss1.1-Ova1-OVRM10149E11.5

Sequence:


               
               CATAATAAAAGCACACAGGAAAAGGAAATCTTTTTAAAAAGAAGAAACTAAAAAGCAGAA
ATCCATCACTGTCCTATGATTCAAATATCTCAGTGTTTGTAGCTGACTCCCCAGTTGGTT
GAGCTGGTCCTGTTTTACTGTTAGTTTCCACTCTCTCCCCAAGGGAGGCAGAATTAAAGT
TGTTTTTGTTTTGTTTTTTTGAGCTCCTTAGGAGGTGTATGCCCTGAAAATACAAGAAGT
GCTTCATATTAATTACTAGAATTATTTTTGTTGCTACAGAAAGACTTTACAAGGAAAGAG
ACTCTTTGAGGTCGAATCTTCCTCTCCTCCTACTTTGCTCTGAGCTCAAGTAAAACACAA
CAGTTGCTCACTTGAAATACCATCTCCCCTAACCTGTGTTTGGACTTGTACCGTTGTGCT
CAGCTCCTGGCCCTTGTTTTTGCTTTCTCTAGCAATTTCCTGGCCAGAGCAGGAACTAGA
GCAGAGTCTGGGAGAAGTGACCATGCCAGGACGGTTTTCCCACCTGTGCTTCCCTGCACG
ACTGAAAGGAGGGGTGTGTCCGACCCTCGCTGCAGTCCGTGTGCCGCAAAGCAGAATCCA
GCTCCGACCCACCACGAAGGTTGTTAATGCGCTATTAATGGTGTTGAAATATGATGTTTT
GGTTACATGTACAAGCTGAGTTTGAATATGGATGAAGTGTGAGCTTTCCACACGTGGTCA
CAGAGCAGCCATCATCCTCCGTGGGCAGCACCTGTCTTTGCTGTCCTGTGTGTGGTTAAG
GCCCAAGGAAGAGTGGTGTGATTGCAGCTGACTTACTTGATCTTACTCTGTTGAGGACGG
ACTTCTCGTGAGGTCGGCTCATGTAGTCGCTCCTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CATAATAAAAGCACACAGGAAAAGGAAATCTTTTTAAAAAGAAGAAACTAAAAAGCAGAA
ATCCATCACTGTCCTATGATTCAAATATCTCAGTGTTTGTAGCTGACTCCCCAGTTGGTT
GAGCTGGTCCTGTTTTACTGTTAGTTTCCACTCTCTCCCCAAGGGAGGCAGAATTAAAGT
TGTTTTTGTTTTGTTTTTTTGAGCTCCTTAGGAGGTGTATGCCCTGAAAATACAAGAAGT
GCTTCATATTAATTACTAGAATTATTTTTGTTGCTACAGAAAGACTTTACAAGGAAAGAG
ACTCTTTGAGGTCGAATCTTCCTCTCCTCCTACTTTGCTCTGAGCTCAAGTAAAACACAA
CAGTTGCTCACTTGAAATACCATCTCCCCTAACCTGTGTTTGGACTTGTACCGTTGTGCT
CAGCTCCTGGCCCTTGTTTTTGCTTTCTCTAGCAATTTCCTGGCCAGAGCAGGAACTAGA
GCAGAGTCTGGGAGAAGTGACCATGCCAGGACGGTTTTCCCACCTGTGCTTCCCTGCACG
ACTGAAAGGAGGGGTGTGTCCGACCCTCGCTGCAGTCCGTGTGCCGCAAAGCAGAATCCA
GCTCCGACCCACCACGAAGGTTGTTAATGCGCTATTAATGGTGTTGAAATATGATGTTTT
GGTTACATGTACAAGCTGAGTTTGAATATGGATGAAGTGTGAGCTTTCCACACGTGGTCA
CAGAGCAGCCATCATCCTCCGTGGGCAGCACCTGTCTTTGCTGTCCTGTGTGTGGTTAAG
GCCCAAGGAAGAGTGGTGTGATTGCAGCTGACTTACTTGATCTTACTCTGTTGAGGACGG
ACTTCTCGTGAGGTCGGCTCATGTAGTCGCTCCTGT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               386-543, - strand, RNAz p=0.969061

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               386-543, - strand, RNAz p=0.969061

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-860, gnl|bosTau2|chr4 (51167931-51167051)
               

               
               1-860, gnl|Hg17|chr7 (130094531-130093703)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-860, gnl|bosTau2|chr4 (51167931-51167051)
               

               
               1-860, gnl|Hg17|chr7 (130094531-130093703)

	1-860, gnl\|bosTau2\|chr4 (51167931-51167051)
	1-860, gnl\|Hg17\|chr7 (130094531-130093703)