Non-Coding RNA Search

Ss1.1-Ova1-OVRM10151B03.5

Sequence:


               
               TTGGTTGATAAGAATATTTTTAAAAATAAAACAGTAAACAAATCTATGCACTTGCTTGTC
AGAAACCTTGTGATCTAGAAAGATCCTGTTGTTCAATTGCAGTCCATAAAGGTGAAGGAA
GGTTTTCACTTTCTTAATCACTTAAAGTTTAGTGAAAATTTAAAGTTTAGTGAAAATGTG
CATGGAATGCTTGTTCAAATGTTTATGCAGATTTGGGCCACTTGGATGATGCAAAAGCCG
TGTTTTCCGGGGTGCCTTTTAGGAACTGACAGCTGTAAGTCACTCGGCGGTTCGGATGTA
CCCATAACCTCTTGCTTTAGAACCCAGCAAACAAACAGCGTTAAGTGGGTGGTAGGTTAT
CCAAAGCCACAGGGAAAGCCCCAAACTCCAGACCGGAGAACGTGCCCATTCCGCGTGCCT
CGTCGCGGCGCCGGGAGCATTGTCCGGTTCCATTCCGTCGGCTGGCCTTGGGACACGCGG
CCGGCTGCGGCGTGGCGAGGTGAAGTTCACAGGCGGCCGGTTCTGGGAAAGCCTAGAGCT
CCCGGACCTCTGGGCGGGCCACAGTTACTCCGTTTTCATCCGCAACCCTGTTTTGTAGGT
CGTTGACCAAGCAGTCAGAAAACACTGCCCCCTCTCTCCTTTTGAGCGAGGTCAGAGACG
TGGTTTTTTGTTTTGTTTTTTTTTTTTTTTTTTTTTTCTTCTTCTTCTTTCCCTCCCTCT
CTCCCCTTTCCCTCCCCTTTCTCCGAGTCGGTTCTCAGGCAGCTGCGTACAATGCTGGGA
GCTAGCCAGCAGCAGAGACAGATGGCAGAGTTATTAGATGTGCATCATACGATTCCCTTC
CTGCCACTCGCTTTTTAATCAAATTAAAACAAAAAAGAAAGAGAGGGAGAGAGAGAGAGG
GGGAGTCAATTAACTGCATTTGTATTCTGCTCAATAATGGACCCTGTTCCACTTTTACCC
TAAGGCAGTTGAGTGGAAATTTTAGAGAAGAAAAGGGTGCCTAGAACAACAACAACCAAA
AAAAATTTTTTTTGTTAAAAGAAAGAAAAAAAGAAAGAAAAAAGAAAGAAAAGAAAGGGG
GGGAGTGAAGACTGGAGAAATTTGTCCGAATCGGCATGATTCGAGGAACTAATAAAAAGC
CCTCGGAAAAGTTGAATCGATGTCGCGTATGCATTAGGATTTAGAGCTCCAGCAGGGCCG
GGCTGCCTTCCAGCTCCGCTGCGCAAACTTGAGCGTCTGACAGCAGCGCGGCGGCCTCCC
CCGCCCGCCAGGAATGGTCTCTTCCTGCTTTGCATATTCACCACGCTTGGCCCGGCCATA
TGGGAAAATGCAACTGAAGGAATTGTTGTGAAAAAAGGGACAGCGAGTTTGAAATAAAAG
TTGTTAGAGTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTGGTTGATAAGAATATTTTTAAAAATAAAACAGTAAACAAATCTATGCACTTGCTTGTC
AGAAACCTTGTGATCTAGAAAGATCCTGTTGTTCAATTGCAGTCCATAAAGGTGAAGGAA
GGTTTTCACTTTCTTAATCACTTAAAGTTTAGTGAAAATTTAAAGTTTAGTGAAAATGTG
CATGGAATGCTTGTTCAAATGTTTATGCAGATTTGGGCCACTTGGATGATGCAAAAGCCG
TGTTTTCCGGGGTGCCTTTTAGGAACTGACAGCTGTAAGTCACTCGGCGGTTCGGATGTA
CCCATAACCTCTTGCTTTAGAACCCAGCAAACAAACAGCGTTAAGTGGGTGGTAGGTTAT
CCAAAGCCACAGGGAAAGCCCCAAACTCCAGACCGGAGAACGTGCCCATTCCGCGTGCCT
CGTCGCGGCGCCGGGAGCATTGTCCGGTTCCATTCCGTCGGCTGGCCTTGGGACACGCGG
CCGGCTGCGGCGTGGCGAGGTGAAGTTCACAGGCGGCCGGTTCTGGGAAAGCCTAGAGCT
CCCGGACCTCTGGGCGGGCCACAGTTACTCCGTTTTCATCCGCAACCCTGTTTTGTAGGT
CGTTGACCAAGCAGTCAGAAAACACTGCCCCCTCTCTCCTTTTGAGCGAGGTCAGAGACG
TGGTTTTTTGTTTTGTTTTTTTTTTTTTTTTTTTTTTCTTCTTCTTCTTTCCCTCCCTCT
CTCCCCTTTCCCTCCCCTTTCTCCGAGTCGGTTCTCAGGCAGCTGCGTACAATGCTGGGA
GCTAGCCAGCAGCAGAGACAGATGGCAGAGTTATTAGATGTGCATCATACGATTCCCTTC
CTGCCACTCGCTTTTTAATCAAATTAAAACAAAAAAGAAAGAGAGGGAGAGAGAGAGAGG
GGGAGTCAATTAACTGCATTTGTATTCTGCTCAATAATGGACCCTGTTCCACTTTTACCC
TAAGGCAGTTGAGTGGAAATTTTAGAGAAGAAAAGGGTGCCTAGAACAACAACAACCAAA
AAAAATTTTTTTTGTTAAAAGAAAGAAAAAAAGAAAGAAAAAAGAAAGAAAAGAAAGGGG
GGGAGTGAAGACTGGAGAAATTTGTCCGAATCGGCATGATTCGAGGAACTAATAAAAAGC
CCTCGGAAAAGTTGAATCGATGTCGCGTATGCATTAGGATTTAGAGCTCCAGCAGGGCCG
GGCTGCCTTCCAGCTCCGCTGCGCAAACTTGAGCGTCTGACAGCAGCGCGGCGGCCTCCC
CCGCCCGCCAGGAATGGTCTCTTCCTGCTTTGCATATTCACCACGCTTGGCCCGGCCATA
TGGGAAAATGCAACTGAAGGAATTGTTGTGAAAAAAGGGACAGCGAGTTTGAAATAAAAG
TTGTTAGAGTGG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               567-685, - strand, RNAz p=0.970414
               

               
               935-1050, + strand, RNAz p=0.720505

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               567-685, - strand, RNAz p=0.970414
               

               
               935-1050, + strand, RNAz p=0.720505

Aligned organism(s): 9 entry(ies)

More info

Aligned organism(s): 9 entry(ies)

Help | Less info


               
               3-379, gnl|bosTau2|chr24 (34933358-34933730)
               

               
               3-379, gnl|Hg17|chr18 (51141338-51140975)
               

               
               3-379, gnl|Mm7|chr18 (69984246-69984642)
               


               
               483-685, gnl|bosTau2|chr24 (34933776-34933977)
               

               
               483-685, gnl|Hg17|chr18 (51140895-51140661)
               

               
               483-685, gnl|Mm7|chr18 (69984734-69984954)
               


               
               720-1392, gnl|bosTau2|chr24 (34933973-34934669)
               

               
               720-1392, gnl|Hg17|chr18 (51140665-51139996)
               

               
               720-1392, gnl|Mm7|chr18 (69984950-69985685)

Aligned organism(s): 9 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-379, gnl|bosTau2|chr24 (34933358-34933730)
               

               
               3-379, gnl|Hg17|chr18 (51141338-51140975)
               

               
               3-379, gnl|Mm7|chr18 (69984246-69984642)
               


               
               483-685, gnl|bosTau2|chr24 (34933776-34933977)
               

               
               483-685, gnl|Hg17|chr18 (51140895-51140661)
               

               
               483-685, gnl|Mm7|chr18 (69984734-69984954)
               


               
               720-1392, gnl|bosTau2|chr24 (34933973-34934669)
               

               
               720-1392, gnl|Hg17|chr18 (51140665-51139996)
               

               
               720-1392, gnl|Mm7|chr18 (69984950-69985685)

	567-685, - strand, RNAz p=0.970414
	935-1050, + strand, RNAz p=0.720505

	3-379, gnl\|bosTau2\|chr24 (34933358-34933730)
	3-379, gnl\|Hg17\|chr18 (51141338-51140975)
	3-379, gnl\|Mm7\|chr18 (69984246-69984642)

	483-685, gnl\|bosTau2\|chr24 (34933776-34933977)
	483-685, gnl\|Hg17\|chr18 (51140895-51140661)
	483-685, gnl\|Mm7\|chr18 (69984734-69984954)

	720-1392, gnl\|bosTau2\|chr24 (34933973-34934669)
	720-1392, gnl\|Hg17\|chr18 (51140665-51139996)
	720-1392, gnl\|Mm7\|chr18 (69984950-69985685)