Non-Coding RNA Search

Ss1.1-Ova1-OVRM10152G03.5

Sequence:


               
               TTTATTTATTGCTAAATGTCCAGATAATGTTAAATGTTCAAATAGGGAAAAGTCAACTAT
TTGGCTGTCCTATCATTTATAATATCAGGTGAATGATTTACCAGATCTTTTCCTGAGGAT
AGATTTTTAACAGGGAGAAAGAGGGTCAAAAGAAGGTTTTGCATGGATTTGGATGTCTAG
AGAAGGGGAGAACCTAGAAATCGGATATAGGTAGGAAGTTATTTGAGCTTTTTCCCCTAT
TTCATAGTCTTGTCTGCATAGGTCTGTTTGCGTTATGTGTTTTGGCAGACAGAGATGGTA
CATACACCATTTCTAAGTCAAGTATTGGAGCACTAGCCATCTGTGGTCCCACATGAGGGG
CACTGACAACATAGTTATCTTTTGCAGGACTGCTGTGTAATGTTTTGCCTTCTAATTTGG
AAATAAATCATATATAACATTTATATATCCAATGATAATTCACTCATTGCATTTGATACC
ATGTAGAAGAATTAAGAAATCATTGGGAAAGCAACTGAAGTATGCACAAGTTCTACAAAG
TTTTCTAATTTTGAAATAATTCACATATAACATTTCTGATTATTCAGTGCTTATTCACTC
ATTGCAGTCGATACCATGTAGAAGAATTAGCTGAAGAAATCATTGGGAATGCAACTGAAG
TATGCACAAGTTCTGCTTGTGCTAAATAAAGATCATGGAGAAAAGAACAGTCCTTAAAAC
ATCTTTGGAGACATATTGGCTTCTGGATTAAATTACAGTTTAGTTCTAGATTCAAGATCA
GTGTATTTTTCTGGTGAAAAACACCATTTCACCATGTAAGGCTTCTTTTGTCAGCTTCGT
GGTCATGTAATAAATGAGTGTATTATGAATGAGAACTTTGAACAGGAATTTGATGATCTC
ACACATTCCTTTATTCATTTTGTTCATTAAGCAAAGATTTATTAAGTGCCTACTCAGTGC
TCTTTACTGGGCTAAATGCTGGGAACTCTGAGGTGAAAAGGAGAGCAGGTCCCTGCCCTT
AGAAAACTTAAGGCCTTTGCCTGGACAGGCAAACAAAGTACAAATTTTGACAGTGCAGTG
GAAGGAGCTAATGAGGTGATAGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTATTTATTGCTAAATGTCCAGATAATGTTAAATGTTCAAATAGGGAAAAGTCAACTAT
TTGGCTGTCCTATCATTTATAATATCAGGTGAATGATTTACCAGATCTTTTCCTGAGGAT
AGATTTTTAACAGGGAGAAAGAGGGTCAAAAGAAGGTTTTGCATGGATTTGGATGTCTAG
AGAAGGGGAGAACCTAGAAATCGGATATAGGTAGGAAGTTATTTGAGCTTTTTCCCCTAT
TTCATAGTCTTGTCTGCATAGGTCTGTTTGCGTTATGTGTTTTGGCAGACAGAGATGGTA
CATACACCATTTCTAAGTCAAGTATTGGAGCACTAGCCATCTGTGGTCCCACATGAGGGG
CACTGACAACATAGTTATCTTTTGCAGGACTGCTGTGTAATGTTTTGCCTTCTAATTTGG
AAATAAATCATATATAACATTTATATATCCAATGATAATTCACTCATTGCATTTGATACC
ATGTAGAAGAATTAAGAAATCATTGGGAAAGCAACTGAAGTATGCACAAGTTCTACAAAG
TTTTCTAATTTTGAAATAATTCACATATAACATTTCTGATTATTCAGTGCTTATTCACTC
ATTGCAGTCGATACCATGTAGAAGAATTAGCTGAAGAAATCATTGGGAATGCAACTGAAG
TATGCACAAGTTCTGCTTGTGCTAAATAAAGATCATGGAGAAAAGAACAGTCCTTAAAAC
ATCTTTGGAGACATATTGGCTTCTGGATTAAATTACAGTTTAGTTCTAGATTCAAGATCA
GTGTATTTTTCTGGTGAAAAACACCATTTCACCATGTAAGGCTTCTTTTGTCAGCTTCGT
GGTCATGTAATAAATGAGTGTATTATGAATGAGAACTTTGAACAGGAATTTGATGATCTC
ACACATTCCTTTATTCATTTTGTTCATTAAGCAAAGATTTATTAAGTGCCTACTCAGTGC
TCTTTACTGGGCTAAATGCTGGGAACTCTGAGGTGAAAAGGAGAGCAGGTCCCTGCCCTT
AGAAAACTTAAGGCCTTTGCCTGGACAGGCAAACAAAGTACAAATTTTGACAGTGCAGTG
GAAGGAGCTAATGAGGTGATAGAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               733-851, + strand, RNAz p=0.907901

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               733-851, + strand, RNAz p=0.907901

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               146-543, gnl|bosTau2|chr7 (19642138-19642524)
               

               
               146-543, gnl|Hg17|chr5 (129407017-129407368)
               


               
               591-1104, gnl|bosTau2|chr7 (19642432-19642966)
               

               
               591-1104, gnl|Mm7|chr18 (59667288-59667766)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               146-543, gnl|bosTau2|chr7 (19642138-19642524)
               

               
               146-543, gnl|Hg17|chr5 (129407017-129407368)
               


               
               591-1104, gnl|bosTau2|chr7 (19642432-19642966)
               

               
               591-1104, gnl|Mm7|chr18 (59667288-59667766)

	146-543, gnl\|bosTau2\|chr7 (19642138-19642524)
	146-543, gnl\|Hg17\|chr5 (129407017-129407368)

	591-1104, gnl\|bosTau2\|chr7 (19642432-19642966)
	591-1104, gnl\|Mm7\|chr18 (59667288-59667766)