Non-Coding RNA Search

Ss1.1-Ova1-OVRM10164F03.5

Sequence:


               
               AGTGTTATTCGAACTCATTAAACTCAGCTCTCAGAGCTGAAAACAGTACCAGGAATTTAA
ATGGTCTCTTCAAATGAGTCAGGTGACTTCCTCCAAAGTATATCATTTTTTTTTAATCCC
TCACAGAGTCTAAGCACATGATGGAATACATTCTACTCTGAAAAGATTACAACTAAGACA
TCATCAGAGAGAGCCCAGAGGCAGGAGAATAGGTAAGAGTGTTGTTTACAAAGAGACCCA
CTCCAAAGACAGCAGTCCAAAACAGAGCAAGTCACAACAGGACACGAGACTAAGCACAGC
AAGATCAATGCTACGTATACACTTATAGTATTCAAAAGAAGGCATTTTACACCACAAAAA
AGTTCCGTGACTAATTGTTACTTAAATTTGTACTGATTTTTGGAGGGAGGGGGCGGGCAG
GGAAGGATCGCCAGTGAGATCCGAGGGGAACCTCTGCCGCCCGCCCTCGCCCTGGCCCCC
AGCTCCCACCCGGTGGGCCCGGCTCAGCCAGGATCGAGGCTCGTCTTTAATAACCACGGG
AAGCCGCGGCTCGCCAAGTTCCACCAGCCCTACAGTGAAGACACCCACAGCAAATCATCA
GGGAGACATCCCATTTGGTGTCTAAGAGAGATGAGCATGTTTGCAACTTCCTAGAAGGAG
GATTATTGGAGGATCTGAGAGCAAAGTGATTTATAGACATTATGGCAACATTGTATTTCG
TCTTCTGTGTGGATTCTTCAGAAGGTGAACTTGGCATTTTAGATCTAATTCAAGTATTTG
TGGAAACATTAGACAAGTGTTTTGAAAATGTCTGTGAACTGGATTTAGTTTTCCATGTAG
ATAAGGTTCACAATATTCTTGCGGAAATGGTGATGGGAGGGAGGAATGGTACTGGAGACC
AACATGAATGAGACTGTGACACAAACTGATGCGCAAAATAAACTGGAGAAGTCTGAGGCT
GGCTTAGCAGGAGCTCCAGCCCGTGCTGTATCAGCTGTAAAGAATATGAATCTTCCTGAG
ATCCCAAGAAATATCAACATTGGTGACATCAGTATAAAAGTGCCAAACCTGCCCTCTTTG
AAATAAAAAATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTGTTATTCGAACTCATTAAACTCAGCTCTCAGAGCTGAAAACAGTACCAGGAATTTAA
ATGGTCTCTTCAAATGAGTCAGGTGACTTCCTCCAAAGTATATCATTTTTTTTTAATCCC
TCACAGAGTCTAAGCACATGATGGAATACATTCTACTCTGAAAAGATTACAACTAAGACA
TCATCAGAGAGAGCCCAGAGGCAGGAGAATAGGTAAGAGTGTTGTTTACAAAGAGACCCA
CTCCAAAGACAGCAGTCCAAAACAGAGCAAGTCACAACAGGACACGAGACTAAGCACAGC
AAGATCAATGCTACGTATACACTTATAGTATTCAAAAGAAGGCATTTTACACCACAAAAA
AGTTCCGTGACTAATTGTTACTTAAATTTGTACTGATTTTTGGAGGGAGGGGGCGGGCAG
GGAAGGATCGCCAGTGAGATCCGAGGGGAACCTCTGCCGCCCGCCCTCGCCCTGGCCCCC
AGCTCCCACCCGGTGGGCCCGGCTCAGCCAGGATCGAGGCTCGTCTTTAATAACCACGGG
AAGCCGCGGCTCGCCAAGTTCCACCAGCCCTACAGTGAAGACACCCACAGCAAATCATCA
GGGAGACATCCCATTTGGTGTCTAAGAGAGATGAGCATGTTTGCAACTTCCTAGAAGGAG
GATTATTGGAGGATCTGAGAGCAAAGTGATTTATAGACATTATGGCAACATTGTATTTCG
TCTTCTGTGTGGATTCTTCAGAAGGTGAACTTGGCATTTTAGATCTAATTCAAGTATTTG
TGGAAACATTAGACAAGTGTTTTGAAAATGTCTGTGAACTGGATTTAGTTTTCCATGTAG
ATAAGGTTCACAATATTCTTGCGGAAATGGTGATGGGAGGGAGGAATGGTACTGGAGACC
AACATGAATGAGACTGTGACACAAACTGATGCGCAAAATAAACTGGAGAAGTCTGAGGCT
GGCTTAGCAGGAGCTCCAGCCCGTGCTGTATCAGCTGTAAAGAATATGAATCTTCCTGAG
ATCCCAAGAAATATCAACATTGGTGACATCAGTATAAAAGTGCCAAACCTGCCCTCTTTG
AAATAAAAAATT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|6753078|ref|NP_033811.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|6753078|ref|NP_033811.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               766-885, + strand, RNAz p=0.963413

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               766-885, + strand, RNAz p=0.963413

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               1-401, gnl|bosTau2|chr11 (65336942-65336524)
               

               
               1-401, gnl|Hg17|chr2 (11316326-11316717)
               


               
               497-1092, gnl|bosTau2|chr11 (36990223-36990823)
               

               
               497-1092, gnl|Hg17|chr1 (211045138-211044539)
               

               
               497-1092, gnl|Mm7|chr8 (92994243-92994841)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-401, gnl|bosTau2|chr11 (65336942-65336524)
               

               
               1-401, gnl|Hg17|chr2 (11316326-11316717)
               


               
               497-1092, gnl|bosTau2|chr11 (36990223-36990823)
               

               
               497-1092, gnl|Hg17|chr1 (211045138-211044539)
               

               
               497-1092, gnl|Mm7|chr8 (92994243-92994841)

	1-401, gnl\|bosTau2\|chr11 (65336942-65336524)
	1-401, gnl\|Hg17\|chr2 (11316326-11316717)

	497-1092, gnl\|bosTau2\|chr11 (36990223-36990823)
	497-1092, gnl\|Hg17\|chr1 (211045138-211044539)
	497-1092, gnl\|Mm7\|chr8 (92994243-92994841)