Non-Coding RNA Search

Ss1.1-Ova1-OVRM10167H02.5

Sequence:


               
               TTTCCTTTGTCATTGCCTCAGGCTTGTAGAAAATTACTTTGGATGGAATTAAAAGAGTGA
AAATACCATCCATATTTGGGGGGATTTGATTTTTAAAAATAACCAGAGTGGTTCAGAGGC
AAGACTCTGAAGTAGGGTTGAAAAAGAACCTGAGATACAATAGTTTGTGTCCAAAATGTG
GTTGTGCTTTTAAAAGAACGACTCCGATTTCTTGTGTGGGGATGTAGGTTAATTTTAAAT
AGGGTTGAATGCCACAGGAATCAGGTTGTTTTTTAAATGATAATATCACTAGAAAAAGTG
CATTGTTTTGCAATATAATTAATTTGAGAGATTAGCACTAATTTGTATGTATTTTGGTGT
ATTTTTTAAGAATTAAATACACCATTTCACTCTGTAGCCTACCATTGCAGCTTCTGTACT
TAGACCAATATATGTTTGTAAGGAAGTAGAGTTAAGATGCACAAGTCTGGGTAGGATGTT
TATCACCTCCTGGAGGAGGACTTTTGTTTCTAACCTTCACACCTGCTATTACATGCACAT
TCACACATGCTGTTATTTCTGGAGAAATGGAAGTGAGGAAGTATTAGATAACCCCAAAGG
GAATAGCCAGAGTTTTAATAGCTGCTACAGTCATTTGAGTTGCTAAATCTGAAAATGGCT
ACCATCTTGTCATTCCCAGATCTGATGGATGTGCTGTAGTTTCTAGAGGGATTGCTCCCA
CAGTAGTCAAGATGATTATACGAGCCATTGAACTGATTTTCTTCTTTGTACTAAAGTGGA
TGCATGCTATACACAAAGCAGAAGTGGCAGGGAAAGGAGCAACCCTTTGTTTCTCTCTTC
TTTTGCATCTGCTAATCAGGTATCTCTGCTCCGGTAGAATTAAGAGGCAAGGTCCTTGTC
TTACAGGACAGCATCTGTGTTTTCTGGTTTGAGGCAGCTCTCAATATTCTCAGGTATTTG
TAATTCAGTTAGTAGTTGGCAGCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTCCTTTGTCATTGCCTCAGGCTTGTAGAAAATTACTTTGGATGGAATTAAAAGAGTGA
AAATACCATCCATATTTGGGGGGATTTGATTTTTAAAAATAACCAGAGTGGTTCAGAGGC
AAGACTCTGAAGTAGGGTTGAAAAAGAACCTGAGATACAATAGTTTGTGTCCAAAATGTG
GTTGTGCTTTTAAAAGAACGACTCCGATTTCTTGTGTGGGGATGTAGGTTAATTTTAAAT
AGGGTTGAATGCCACAGGAATCAGGTTGTTTTTTAAATGATAATATCACTAGAAAAAGTG
CATTGTTTTGCAATATAATTAATTTGAGAGATTAGCACTAATTTGTATGTATTTTGGTGT
ATTTTTTAAGAATTAAATACACCATTTCACTCTGTAGCCTACCATTGCAGCTTCTGTACT
TAGACCAATATATGTTTGTAAGGAAGTAGAGTTAAGATGCACAAGTCTGGGTAGGATGTT
TATCACCTCCTGGAGGAGGACTTTTGTTTCTAACCTTCACACCTGCTATTACATGCACAT
TCACACATGCTGTTATTTCTGGAGAAATGGAAGTGAGGAAGTATTAGATAACCCCAAAGG
GAATAGCCAGAGTTTTAATAGCTGCTACAGTCATTTGAGTTGCTAAATCTGAAAATGGCT
ACCATCTTGTCATTCCCAGATCTGATGGATGTGCTGTAGTTTCTAGAGGGATTGCTCCCA
CAGTAGTCAAGATGATTATACGAGCCATTGAACTGATTTTCTTCTTTGTACTAAAGTGGA
TGCATGCTATACACAAAGCAGAAGTGGCAGGGAAAGGAGCAACCCTTTGTTTCTCTCTTC
TTTTGCATCTGCTAATCAGGTATCTCTGCTCCGGTAGAATTAAGAGGCAAGGTCCTTGTC
TTACAGGACAGCATCTGTGTTTTCTGGTTTGAGGCAGCTCTCAATATTCTCAGGTATTTG
TAATTCAGTTAGTAGTTGGCAGCA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               296-438, - strand, RNAz p=0.998216

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               296-438, - strand, RNAz p=0.998216

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               104-632, gnl|bosTau2|chr2 (23009467-23009992)
               

               
               104-632, gnl|Hg17|chr2 (165514604-165514063)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               104-632, gnl|bosTau2|chr2 (23009467-23009992)
               

               
               104-632, gnl|Hg17|chr2 (165514604-165514063)

	104-632, gnl\|bosTau2\|chr2 (23009467-23009992)
	104-632, gnl\|Hg17\|chr2 (165514604-165514063)