Non-Coding RNA Search

Ss1.1-Ova1-OVRM10170E08.5

Sequence:


               
               ACTGGTGAAACTCGGCTCAGCGGGGTGTGGGGGGCTCCGCGGGAGGCAGGAAGGAAGGAG
CGAAGCCGGGAAGGGCGGGTGCTCGCGCTCAGGTGGAACTTTTCCTCCTGCTTGCAAGCC
GAGTGGAGCTGGGATACGGAGTCGGAGGTTGGACGGTTGTCTGGAGTGTTTGTGTCCCAG
GAGAGAGCAAGGAGTCTCCAGACCAGCACAGATATCCTGAGGCAACCTGAGGAGCTGCCC
AGAGGTCTCCTCGGACCAATCGCAAACTCTGGGGACCAGGATGAGGTGTCTGCGGCCCCT
GCGGACTGAAGTGGGACTGGTCGTGGCTCTGGGCACCTTCACTCTCTTCTTCTTCTTCAA
TCTGCACATGTCACCACCCACCTGCCCAGGCCTGAAGGAGCCGCCAAGTACCCCCTTGGC
TCTGGTCTGGCCCTCTCCACCACCCTCCCGCCCCCTGTCCTCTTCCTGCCAGGCCAATGC
CTCAATGGCCTCCCTGCCTGACTTCGCCAAGCAGCCACAGCACATACGCAACTTCCTGCT
CTACAAACACTGCCGGGATTTCGTGCTGCTCCAGGATGTGCCGCCGGACAAGTGCGCACA
GCCAGTCTTCCTGCTGCTGGTGATCAAGTCCTCGCCCAGCAATTATGAGCGCCGGGAACT
GGTGCGGCGCACGTGGGGCCATGAGCGCCAGGTACACGGCTTCCTTGTGCGCCGCCTCTT
CCTGGTGGGCACGGACCCCAACCCGTTGGAGGCACTCAAGGTCAACCGGCTGCTGGCCAT
GGAGGCGCAGATGCATGGTGATATCCTACAGTGGGATTTCTACGACTCATTCTTCAACCT
CACGCTCAAGCAGGTACTCTTCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACTGGTGAAACTCGGCTCAGCGGGGTGTGGGGGGCTCCGCGGGAGGCAGGAAGGAAGGAG
CGAAGCCGGGAAGGGCGGGTGCTCGCGCTCAGGTGGAACTTTTCCTCCTGCTTGCAAGCC
GAGTGGAGCTGGGATACGGAGTCGGAGGTTGGACGGTTGTCTGGAGTGTTTGTGTCCCAG
GAGAGAGCAAGGAGTCTCCAGACCAGCACAGATATCCTGAGGCAACCTGAGGAGCTGCCC
AGAGGTCTCCTCGGACCAATCGCAAACTCTGGGGACCAGGATGAGGTGTCTGCGGCCCCT
GCGGACTGAAGTGGGACTGGTCGTGGCTCTGGGCACCTTCACTCTCTTCTTCTTCTTCAA
TCTGCACATGTCACCACCCACCTGCCCAGGCCTGAAGGAGCCGCCAAGTACCCCCTTGGC
TCTGGTCTGGCCCTCTCCACCACCCTCCCGCCCCCTGTCCTCTTCCTGCCAGGCCAATGC
CTCAATGGCCTCCCTGCCTGACTTCGCCAAGCAGCCACAGCACATACGCAACTTCCTGCT
CTACAAACACTGCCGGGATTTCGTGCTGCTCCAGGATGTGCCGCCGGACAAGTGCGCACA
GCCAGTCTTCCTGCTGCTGGTGATCAAGTCCTCGCCCAGCAATTATGAGCGCCGGGAACT
GGTGCGGCGCACGTGGGGCCATGAGCGCCAGGTACACGGCTTCCTTGTGCGCCGCCTCTT
CCTGGTGGGCACGGACCCCAACCCGTTGGAGGCACTCAAGGTCAACCGGCTGCTGGCCAT
GGAGGCGCAGATGCATGGTGATATCCTACAGTGGGATTTCTACGACTCATTCTTCAACCT
CACGCTCAAGCAGGTACTCTTCCT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|57101758|ref|XP_541947.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57101758|ref|XP_541947.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               657-770, + strand, RNAz p=0.801778

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               657-770, + strand, RNAz p=0.801778

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               462-864, gnl|bosTau2|chr15 (35491545-35491956)
               

               
               462-864, gnl|Hg17|chr11 (76428446-76428857)
               

               
               462-864, gnl|Mm7|chr7 (94226466-94226055)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               462-864, gnl|bosTau2|chr15 (35491545-35491956)
               

               
               462-864, gnl|Hg17|chr11 (76428446-76428857)
               

               
               462-864, gnl|Mm7|chr7 (94226466-94226055)

	462-864, gnl\|bosTau2\|chr15 (35491545-35491956)
	462-864, gnl\|Hg17\|chr11 (76428446-76428857)
	462-864, gnl\|Mm7\|chr7 (94226466-94226055)