Non-Coding RNA Search

Ss1.1-Ova1-OVRM10185A03.5

Sequence:


               
               AATAACCCCCGGCGCGTGGCTGAGTGTGAGCGAGCGTGTGGGACGTCGGGAGGCGTCGTG
GATTAACTGAACCGCCACACTCGGCTGTCCCTTGTCTGGACCAAAACTGCTGACTGACCC
TGGCGGTCACATTTGCCCTCTGGGGTTTTTGAAAACCTTAAATCAAAGTTACTTTTCTCC
CTGGCAACTCCCAAGGCTACTTCCGCGGCCTCTGGGCTGTGAACTGATAAGGACGTGAGT
TTTCCCGACCAGGGGTGAGCATACCAGTGACAAATCGGTCTGAGAGACCGGCCACCAGGC
GATTTTCGATTTGCTCTGAATCAGTTCTTTCCATTTAACCACTGGGGCTGTGGATGATAG
ATCCCGCTGAGTAGACTGTGGGCTGGAGTTTTGTCTACTCTGGAGGCAGAAAGGACTAGA
GCAGTGATGCGGGTATTTCAAGACAGTTTTAGTAGTTCTTCAAGTTCGAGTCTTCCGGGC
TTGGATTATCCAGATAATTGTAGTTCTCCACACCCCTGGGTTTGTGTAGTCGCAGCGGTA
GAGTTAATTAGAATCCCGGAGTGAAAAAAAAATCGCGCTTGAAAAATTCGTGTCCAGTTT
TTAGTGCATTGGACAGTGTGCGTTGTATAAAACTCTAGATGTGCTTTTAAAACATGTTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATAACCCCCGGCGCGTGGCTGAGTGTGAGCGAGCGTGTGGGACGTCGGGAGGCGTCGTG
GATTAACTGAACCGCCACACTCGGCTGTCCCTTGTCTGGACCAAAACTGCTGACTGACCC
TGGCGGTCACATTTGCCCTCTGGGGTTTTTGAAAACCTTAAATCAAAGTTACTTTTCTCC
CTGGCAACTCCCAAGGCTACTTCCGCGGCCTCTGGGCTGTGAACTGATAAGGACGTGAGT
TTTCCCGACCAGGGGTGAGCATACCAGTGACAAATCGGTCTGAGAGACCGGCCACCAGGC
GATTTTCGATTTGCTCTGAATCAGTTCTTTCCATTTAACCACTGGGGCTGTGGATGATAG
ATCCCGCTGAGTAGACTGTGGGCTGGAGTTTTGTCTACTCTGGAGGCAGAAAGGACTAGA
GCAGTGATGCGGGTATTTCAAGACAGTTTTAGTAGTTCTTCAAGTTCGAGTCTTCCGGGC
TTGGATTATCCAGATAATTGTAGTTCTCCACACCCCTGGGTTTGTGTAGTCGCAGCGGTA
GAGTTAATTAGAATCCCGGAGTGAAAAAAAAATCGCGCTTGAAAAATTCGTGTCCAGTTT
TTAGTGCATTGGACAGTGTGCGTTGTATAAAACTCTAGATGTGCTTTTAAAACATGTTTT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               117-231, - strand, RNAz p=0.987493

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               117-231, - strand, RNAz p=0.987493

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-571, gnl|bosTau2|chr9 (13062047-13062632)
               

               
               1-571, gnl|Hg17|chr6 (126112050-126111511)
               

               
               1-571, gnl|Mm7|chr10 (30623810-30624353)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-571, gnl|bosTau2|chr9 (13062047-13062632)
               

               
               1-571, gnl|Hg17|chr6 (126112050-126111511)
               

               
               1-571, gnl|Mm7|chr10 (30623810-30624353)

	1-571, gnl\|bosTau2\|chr9 (13062047-13062632)
	1-571, gnl\|Hg17\|chr6 (126112050-126111511)
	1-571, gnl\|Mm7\|chr10 (30623810-30624353)