Non-Coding RNA Search

Ss1.1-Ova1-OVRM10186C11.5

Sequence:


               
               GAGGGCAGCCTGCCCCCTCTGGGGGAAATCAGAAAGCTGGCCCTCTCTTCTTAGAAGCCA
TTTGAAATTACTGCAGGGATCAGCTCCCTGGGGTGGAGCACACACAGGGTATTCAGTGGG
GTAGAGGTGCGAAGTCGTCTGGTATCCGTGCCCTTTAGCCAACAGCGGAGCGTCACCTCT
ACCTCCACTCCCCCCCACACCAGCTGCACTCCCCTGGCTGCCAGGGTGGGGGTTATCTGT
TTTCCCCACCTCCTAGCAGTTCAGAAAGGCGAGTCCTCTGGCCCTCCGGGGCACCAGAGC
TCCCAGCCATCAGGAGGCTTGAGTTGGTATCAAGGCCTGAGCCCCCACATTCCACTCCCA
TTCCCCCTACAGAGGGTCTTAGCATTGTCTCTTCCGGTGCCCCCTTTCTCCTGGCCGGAA
CTTGTGATGCCAGCTATGGGACATTGCTGCAGGACAGTAAAGCCCTCTGCTGGGCAAACA
AGAAGCCCTGGCCTACCTTTCCTCAGCCCCTTGGCCTTCCCTGGCCTCCAGCCCTGGTCC
CCAGCAGGCTGCTGGAGCCGAGGCCACCTTCTCCCCATGTCCTGAGTGATGCTTAGTCAG
AAGTCTGTGTTGGAATGTCCCTTATGGTTTACAGGGCACTGGCCCACCTTCTAAAGACCT
TGGCCACAGGTGAAGTAACACACACACACATTGAATGTTCACTGTTAGAGCACTTGGCTG
GCTGATGTGCACCTGGTTTCCTCTCATGTCCTGCCCTAGCTTCACCATCCTGGCTCTTAT
CAAAGAACATGAAAAGGGATGGAACACAGAGTTGCATCCCTTTTCATGGAAGCCTGAATT
TTGGATTCTTGGTGTCCACAGCCTAGCTGATGTGAGATGGCCCATAGAGTGTCTGGCTTG
GGTAGAAGGAGCCTCCCCAAAGACAGCAGTGGGTGCTAGATACTGGAGGTTGAGGAGAGG
GAGGCACATGGGACTGCAGCAAGGGCCAAGAGACACACTGGAAAGGTGGTAGGTGGGACA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGGGCAGCCTGCCCCCTCTGGGGGAAATCAGAAAGCTGGCCCTCTCTTCTTAGAAGCCA
TTTGAAATTACTGCAGGGATCAGCTCCCTGGGGTGGAGCACACACAGGGTATTCAGTGGG
GTAGAGGTGCGAAGTCGTCTGGTATCCGTGCCCTTTAGCCAACAGCGGAGCGTCACCTCT
ACCTCCACTCCCCCCCACACCAGCTGCACTCCCCTGGCTGCCAGGGTGGGGGTTATCTGT
TTTCCCCACCTCCTAGCAGTTCAGAAAGGCGAGTCCTCTGGCCCTCCGGGGCACCAGAGC
TCCCAGCCATCAGGAGGCTTGAGTTGGTATCAAGGCCTGAGCCCCCACATTCCACTCCCA
TTCCCCCTACAGAGGGTCTTAGCATTGTCTCTTCCGGTGCCCCCTTTCTCCTGGCCGGAA
CTTGTGATGCCAGCTATGGGACATTGCTGCAGGACAGTAAAGCCCTCTGCTGGGCAAACA
AGAAGCCCTGGCCTACCTTTCCTCAGCCCCTTGGCCTTCCCTGGCCTCCAGCCCTGGTCC
CCAGCAGGCTGCTGGAGCCGAGGCCACCTTCTCCCCATGTCCTGAGTGATGCTTAGTCAG
AAGTCTGTGTTGGAATGTCCCTTATGGTTTACAGGGCACTGGCCCACCTTCTAAAGACCT
TGGCCACAGGTGAAGTAACACACACACACATTGAATGTTCACTGTTAGAGCACTTGGCTG
GCTGATGTGCACCTGGTTTCCTCTCATGTCCTGCCCTAGCTTCACCATCCTGGCTCTTAT
CAAAGAACATGAAAAGGGATGGAACACAGAGTTGCATCCCTTTTCATGGAAGCCTGAATT
TTGGATTCTTGGTGTCCACAGCCTAGCTGATGTGAGATGGCCCATAGAGTGTCTGGCTTG
GGTAGAAGGAGCCTCCCCAAAGACAGCAGTGGGTGCTAGATACTGGAGGTTGAGGAGAGG
GAGGCACATGGGACTGCAGCAAGGGCCAAGAGACACACTGGAAAGGTGGTAGGTGGGACA

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

Help | Less info


               
               1-391, - strand, RNAz p=0.978481
               

               
               430-584, - strand, RNAz p=0.93818
               

               
               811-905, - strand, RNAz p=0.57462

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-391, - strand, RNAz p=0.978481
               

               
               430-584, - strand, RNAz p=0.93818
               

               
               811-905, - strand, RNAz p=0.57462

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               201-285, - strand, RNAmicro p=0.999995
               

               
               466-579, - strand, RNAmicro p=0.99101

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               201-285, - strand, RNAmicro p=0.999995
               

               
               466-579, - strand, RNAmicro p=0.99101

Aligned organism(s): 16 entry(ies)

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Aligned organism(s): 16 entry(ies)

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               1-674, gnl|bosTau2|chr10 (25125162-25124489)
               

               
               1-674, gnl|Hg17|chr15 (39905204-39905860)
               

               
               1-674, gnl|Mm7|chr2 (119766455-119767092)
               


               
               678-1020, gnl|bosTau2|chr10 (25124394-25124064)
               

               
               678-1020, gnl|canFam2|chr30 (11850701-11851006)
               

               
               678-1020, gnl|dasNov1|scaffold_5042 (3891-3590)
               

               
               678-1020, gnl|echTel1|scaffold_267852 (4016-4357)
               

               
               678-1020, gnl|hg17|chr15 (39905778-39906128)
               

               
               678-1020, gnl|Hg17|chr15 (39905911-39906240)
               

               
               678-1020, gnl|loxAfr1|scaffold_3669 (3733-3401)
               

               
               678-1020, gnl|mm7|chr2 (119767013-119767407)
               

               
               678-1020, gnl|Mm7|chr2 (119767166-119767511)
               

               
               678-1020, gnl|monDom2|scaffold_12 (2365-2013)
               

               
               678-1020, gnl|panTro1|chr16_random (10695413-10695763)
               

               
               678-1020, gnl|rheMac2|chr7 (20245075-20245459)
               

               
               678-1020, gnl|rn3|chr3 (106428110-106428456)

Aligned organism(s): 16 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-674, gnl|bosTau2|chr10 (25125162-25124489)
               

               
               1-674, gnl|Hg17|chr15 (39905204-39905860)
               

               
               1-674, gnl|Mm7|chr2 (119766455-119767092)
               


               
               678-1020, gnl|bosTau2|chr10 (25124394-25124064)
               

               
               678-1020, gnl|canFam2|chr30 (11850701-11851006)
               

               
               678-1020, gnl|dasNov1|scaffold_5042 (3891-3590)
               

               
               678-1020, gnl|echTel1|scaffold_267852 (4016-4357)
               

               
               678-1020, gnl|hg17|chr15 (39905778-39906128)
               

               
               678-1020, gnl|Hg17|chr15 (39905911-39906240)
               

               
               678-1020, gnl|loxAfr1|scaffold_3669 (3733-3401)
               

               
               678-1020, gnl|mm7|chr2 (119767013-119767407)
               

               
               678-1020, gnl|Mm7|chr2 (119767166-119767511)
               

               
               678-1020, gnl|monDom2|scaffold_12 (2365-2013)
               

               
               678-1020, gnl|panTro1|chr16_random (10695413-10695763)
               

               
               678-1020, gnl|rheMac2|chr7 (20245075-20245459)
               

               
               678-1020, gnl|rn3|chr3 (106428110-106428456)

	1-391, - strand, RNAz p=0.978481
	430-584, - strand, RNAz p=0.93818
	811-905, - strand, RNAz p=0.57462

	201-285, - strand, RNAmicro p=0.999995
	466-579, - strand, RNAmicro p=0.99101

	1-674, gnl\|bosTau2\|chr10 (25125162-25124489)
	1-674, gnl\|Hg17\|chr15 (39905204-39905860)
	1-674, gnl\|Mm7\|chr2 (119766455-119767092)

	678-1020, gnl\|bosTau2\|chr10 (25124394-25124064)
	678-1020, gnl\|canFam2\|chr30 (11850701-11851006)
	678-1020, gnl\|dasNov1\|scaffold_5042 (3891-3590)
	678-1020, gnl\|echTel1\|scaffold_267852 (4016-4357)
	678-1020, gnl\|hg17\|chr15 (39905778-39906128)
	678-1020, gnl\|Hg17\|chr15 (39905911-39906240)
	678-1020, gnl\|loxAfr1\|scaffold_3669 (3733-3401)
	678-1020, gnl\|mm7\|chr2 (119767013-119767407)
	678-1020, gnl\|Mm7\|chr2 (119767166-119767511)
	678-1020, gnl\|monDom2\|scaffold_12 (2365-2013)
	678-1020, gnl\|panTro1\|chr16_random (10695413-10695763)
	678-1020, gnl\|rheMac2\|chr7 (20245075-20245459)
	678-1020, gnl\|rn3\|chr3 (106428110-106428456)