Non-Coding RNA Search

Ss1.1-Ova1-OVRM10186F10.5

Sequence:


               
               CTGGCTCGCTTAGAAGACACTGTTGGTGTTCTCATCTGTCTCCTGTCTCTGGCGCTCAGT
ACCTCCCTCTGCCATTCACACATTCCTTTCCTTGCGGAATTGTAAACGAATGAATTCCAT
ATCCGCTCCTAGGCCCACCGTCAGCTTTATCATCTAAGTGGAGACTACGAACATCTTTCA
TGAGCTGAACATCTTTCATGAGCTGCGTGAGGCAGAATTTCCCGCTCGGCTGCCCGGCTG
TCTCAGTGTGCATTTCAGCTTCATAGCTGTTCTCTTTCTTGTCCCACCTGTCACTGGTAC
CCTTGCACAGCTCTCGGCTTGCCCAGTTCTGTCTTAGTTCATGGAACAGCTCACTCTCAA
ACACCCTTGTAGTTAGCAGTCATATGGTGGTTTTCAAGCAGCCAGGGATTCTTTCCCCCA
CCGCCCCCAACAGATTTTTTACCTTTATTTTTATTCATCTTGTAAGCAGGGCAAAGTTTA
CATGAGAGTCAATTCATCTTGAAATGTTGACGTCAGATCTGTTATGTAGAAACTTGCAAC
CAGTGTCTGAAAGAAAAACTATATTTATCTTGTTGTACAAATACAGTTTTTAAAGCACTT
TTTGGTTTGTTTCCATTTTTTAATAAACAATTTGAAGAAGGCTTTTTGTTTACTCCTGGA
CATTTCAAGACCCTTGTGGAGGAGAGGGACTTCTCTTCTCTTTGGGGGGATAAAAATGAG
GGGTTTGGTTTTCTGAGAACAGTGTGACTACAGAGGTAAATCTAGAACTTTCTAAGTCTG
GGCAGTCCTGCTAAACTTACTAAGTTTAGTGTTAGGTTCACCTAGTTTTGCTTTGTCTAA
GACATCAGGGTTCTTAAAGCCATGTTTATTTCTTGTCTCTCATTCGCTGATAAGAATACC
ATCCTCTTGGCCTTGAAGTCAGCACTCAACCAGCCTGTCTCCTAGAGAGAAGGTTAATAA
ATCACCCCAGACTTCAGCCTCAGAATACATCAGGAAAGATGGGGTTGTCTGTCACATCCA
GCCTCTGGCGTGCTTGAGCCAGTTTTATTACCTCTCTAGAGCTGATTATTAAATAGGAAT
TTAGTAAGCTGTTCAAATTTGGTAACTTGAAAATCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGGCTCGCTTAGAAGACACTGTTGGTGTTCTCATCTGTCTCCTGTCTCTGGCGCTCAGT
ACCTCCCTCTGCCATTCACACATTCCTTTCCTTGCGGAATTGTAAACGAATGAATTCCAT
ATCCGCTCCTAGGCCCACCGTCAGCTTTATCATCTAAGTGGAGACTACGAACATCTTTCA
TGAGCTGAACATCTTTCATGAGCTGCGTGAGGCAGAATTTCCCGCTCGGCTGCCCGGCTG
TCTCAGTGTGCATTTCAGCTTCATAGCTGTTCTCTTTCTTGTCCCACCTGTCACTGGTAC
CCTTGCACAGCTCTCGGCTTGCCCAGTTCTGTCTTAGTTCATGGAACAGCTCACTCTCAA
ACACCCTTGTAGTTAGCAGTCATATGGTGGTTTTCAAGCAGCCAGGGATTCTTTCCCCCA
CCGCCCCCAACAGATTTTTTACCTTTATTTTTATTCATCTTGTAAGCAGGGCAAAGTTTA
CATGAGAGTCAATTCATCTTGAAATGTTGACGTCAGATCTGTTATGTAGAAACTTGCAAC
CAGTGTCTGAAAGAAAAACTATATTTATCTTGTTGTACAAATACAGTTTTTAAAGCACTT
TTTGGTTTGTTTCCATTTTTTAATAAACAATTTGAAGAAGGCTTTTTGTTTACTCCTGGA
CATTTCAAGACCCTTGTGGAGGAGAGGGACTTCTCTTCTCTTTGGGGGGATAAAAATGAG
GGGTTTGGTTTTCTGAGAACAGTGTGACTACAGAGGTAAATCTAGAACTTTCTAAGTCTG
GGCAGTCCTGCTAAACTTACTAAGTTTAGTGTTAGGTTCACCTAGTTTTGCTTTGTCTAA
GACATCAGGGTTCTTAAAGCCATGTTTATTTCTTGTCTCTCATTCGCTGATAAGAATACC
ATCCTCTTGGCCTTGAAGTCAGCACTCAACCAGCCTGTCTCCTAGAGAGAAGGTTAATAA
ATCACCCCAGACTTCAGCCTCAGAATACATCAGGAAAGATGGGGTTGTCTGTCACATCCA
GCCTCTGGCGTGCTTGAGCCAGTTTTATTACCTCTCTAGAGCTGATTATTAAATAGGAAT
TTAGTAAGCTGTTCAAATTTGGTAACTTGAAAATCA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               500-615, - strand, RNAz p=0.52934

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               500-615, - strand, RNAz p=0.52934

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               7-361, gnl|bosTau2|chr7 (5632825-5632487)
               

               
               7-361, gnl|Hg17|chr19 (16373069-16372714)
               


               
               426-1110, gnl|bosTau2|chr7 (5632386-5631711)
               

               
               426-1110, gnl|Hg17|chr19 (16372621-16371442)

Aligned organism(s): 4 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-361, gnl|bosTau2|chr7 (5632825-5632487)
               

               
               7-361, gnl|Hg17|chr19 (16373069-16372714)
               


               
               426-1110, gnl|bosTau2|chr7 (5632386-5631711)
               

               
               426-1110, gnl|Hg17|chr19 (16372621-16371442)

	7-361, gnl\|bosTau2\|chr7 (5632825-5632487)
	7-361, gnl\|Hg17\|chr19 (16373069-16372714)

	426-1110, gnl\|bosTau2\|chr7 (5632386-5631711)
	426-1110, gnl\|Hg17\|chr19 (16372621-16371442)