Non-Coding RNA Search

Ss1.1-Ova1-OVRM10187A05.5

Sequence:


               
               TATCTGAAATCTTTGCATGTTTTGTTTTTTGCCATTTAAGAATGCAGACTTCTGAAATTT
TTAAGTATAAATTCCTAGATACATTTTAAAATTTAAATTCCTTAAATTTTTATCACAAAA
TACATTATAAAATGCAGGCTAGCAGAATGGGAAAGAAGAATAAAATTTTTCTTTAATTCT
ACCATCCAGCAATAATCACATTTTGGTAATATCCTTTGGGACAATATAGACATAGAAAAA
AATAGGATCAGTTTATAATAACTGTTTTACAACCTGCTGTAATCATTTAGCATACATCTT
AATTGTCTTTTCCTATTCCTTTTCCAATACCTCATTACTGGTTTTCAAACTTTGTGAAAC
AAACAAAAATCTTCCTTCAGAAGCCCAATATAAGTAAGCAGGAAAAGGGGAATGTTCTCT
GGCTGGGGCAGTGGTGGGTGAGCCAAAGCCTTGTTCTCTTATCCTCTCGTGTTCTCTGAA
GTACCTAATAGTAACTAGCATTTATTAAGCACTTACTGCATCCTAAGTAAGAAATGCTAA
TGCTCTAACTACTTCATATGTACTATTTTCTGGTTAGAAGTATTATTAAGCTCATTTTAC
ATATGAGGAAACTGAGGTGCAGAGAATTTAAGCAATGCAGTGCATGACAGCTGGAATTCA
AATCTCAGTAATTACACTCCAGATCCTATGCTTTTCATTATTACAGTTCTCTGTGGAATC
ATCCCAGGGAATTCAATTCATTTTCTGAAAATCCAAATAAGCATTTCTCAGGTTGATTAC
TTATCTCATATACCAGATTCTGCTCTGGCTTTTACAGGTAAAATATGAATTTCCAAATAT
GTAAACTGTACAGTGTTTTTATATATACCCATCAAACCTGAGATGTAGCTTGTTGGAAAA
TAAGACTATAATATTTATCTGGTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TATCTGAAATCTTTGCATGTTTTGTTTTTTGCCATTTAAGAATGCAGACTTCTGAAATTT
TTAAGTATAAATTCCTAGATACATTTTAAAATTTAAATTCCTTAAATTTTTATCACAAAA
TACATTATAAAATGCAGGCTAGCAGAATGGGAAAGAAGAATAAAATTTTTCTTTAATTCT
ACCATCCAGCAATAATCACATTTTGGTAATATCCTTTGGGACAATATAGACATAGAAAAA
AATAGGATCAGTTTATAATAACTGTTTTACAACCTGCTGTAATCATTTAGCATACATCTT
AATTGTCTTTTCCTATTCCTTTTCCAATACCTCATTACTGGTTTTCAAACTTTGTGAAAC
AAACAAAAATCTTCCTTCAGAAGCCCAATATAAGTAAGCAGGAAAAGGGGAATGTTCTCT
GGCTGGGGCAGTGGTGGGTGAGCCAAAGCCTTGTTCTCTTATCCTCTCGTGTTCTCTGAA
GTACCTAATAGTAACTAGCATTTATTAAGCACTTACTGCATCCTAAGTAAGAAATGCTAA
TGCTCTAACTACTTCATATGTACTATTTTCTGGTTAGAAGTATTATTAAGCTCATTTTAC
ATATGAGGAAACTGAGGTGCAGAGAATTTAAGCAATGCAGTGCATGACAGCTGGAATTCA
AATCTCAGTAATTACACTCCAGATCCTATGCTTTTCATTATTACAGTTCTCTGTGGAATC
ATCCCAGGGAATTCAATTCATTTTCTGAAAATCCAAATAAGCATTTCTCAGGTTGATTAC
TTATCTCATATACCAGATTCTGCTCTGGCTTTTACAGGTAAAATATGAATTTCCAAATAT
GTAAACTGTACAGTGTTTTTATATATACCCATCAAACCTGAGATGTAGCTTGTTGGAAAA
TAAGACTATAATATTTATCTGGTC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               668-786, - strand, RNAz p=0.998952

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               668-786, - strand, RNAz p=0.998952

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               25-786, gnl|bosTau2|chr25 (18478297-18477522)
               

               
               25-786, gnl|Hg17|chr16 (20709325-20707929)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               25-786, gnl|bosTau2|chr25 (18478297-18477522)
               

               
               25-786, gnl|Hg17|chr16 (20709325-20707929)

	25-786, gnl\|bosTau2\|chr25 (18478297-18477522)
	25-786, gnl\|Hg17\|chr16 (20709325-20707929)