Non-Coding RNA Search

Ss1.1-Ova1-OVRM10191D05.5

Sequence:


               
               AAAAAAAAAAAGCCCGAGCCGAGGGAGCGGGCATGAGGCGCTGCCCGTGCCGGGGAAGCC
TGAGCGAGGTGCAGGCCGGGGCGCTGCCGGGGGCGGCCCGCATGGGACTGGCGGCGCCGC
GAGGGGGGCGGCGGCGGCAGCCTGGGCAGCAGCGACCTGGGCCCGGCGCTGGAGGCCCGG
CCGGGCCGCCGGAGCGAGGCGGGCCCCGGGTCGAGGCCGAGGGGTCCAACCTTCACACCA
AGCCCGAGAGGGCCGGCCTCGGGCCTGACTCGGGGACCGACGGACAGGCTGAGCCTGAAG
CAACTGGCTTAGGAGCGAAGACGGTGCGGCCCAGCCAAAAGACGGAGCCAGGCAGGTCCA
TCCTCCGGACACAACCAGCGCTGGAGACAGCCGGTGCCTGAACAGAGACTAGGACAGATG
GCTTATGGACTGATGCACACAGCTTCGATCTCCAGCCTCAGCCAGAGAGGGCTCACCTCT
GGAAACAGCCAGGGGTTGATGGGCCCTGGACAGACCTAGAAATACATGGGTCACAGATCC
AGCCAGAGAGGGTCAAGCCCGGGACTGAAAACCTCAGGACCCACCAGAACAGGTCCAGCG
TTGGGACTCAGCCAGAAGGGGCTCCTCGCTCAACAGAGCCAAGTACCATTGGCTCTTGGA
AAGAATTGTACACTGATGGCTCCAGGACACAGCAGGATACTGAAGACTCCTGGACAGAGC
TGCATACTGATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAAAAAAAAGCCCGAGCCGAGGGAGCGGGCATGAGGCGCTGCCCGTGCCGGGGAAGCC
TGAGCGAGGTGCAGGCCGGGGCGCTGCCGGGGGCGGCCCGCATGGGACTGGCGGCGCCGC
GAGGGGGGCGGCGGCGGCAGCCTGGGCAGCAGCGACCTGGGCCCGGCGCTGGAGGCCCGG
CCGGGCCGCCGGAGCGAGGCGGGCCCCGGGTCGAGGCCGAGGGGTCCAACCTTCACACCA
AGCCCGAGAGGGCCGGCCTCGGGCCTGACTCGGGGACCGACGGACAGGCTGAGCCTGAAG
CAACTGGCTTAGGAGCGAAGACGGTGCGGCCCAGCCAAAAGACGGAGCCAGGCAGGTCCA
TCCTCCGGACACAACCAGCGCTGGAGACAGCCGGTGCCTGAACAGAGACTAGGACAGATG
GCTTATGGACTGATGCACACAGCTTCGATCTCCAGCCTCAGCCAGAGAGGGCTCACCTCT
GGAAACAGCCAGGGGTTGATGGGCCCTGGACAGACCTAGAAATACATGGGTCACAGATCC
AGCCAGAGAGGGTCAAGCCCGGGACTGAAAACCTCAGGACCCACCAGAACAGGTCCAGCG
TTGGGACTCAGCCAGAAGGGGCTCCTCGCTCAACAGAGCCAAGTACCATTGGCTCTTGGA
AAGAATTGTACACTGATGGCTCCAGGACACAGCAGGATACTGAAGACTCCTGGACAGAGC
TGCATACTGATG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               249-341, - strand, RNAz p=0.897857

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               249-341, - strand, RNAz p=0.897857

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               198-310, - strand, RNAmicro p=0.922425

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               198-310, - strand, RNAmicro p=0.922425

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               10-392, gnl|bosTau2|chr18 (45433434-45433814)
               

               
               10-392, gnl|Hg17|chr19 (45914858-45915261)
               

               
               10-392, gnl|Mm7|chr7 (24147369-24146962)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               10-392, gnl|bosTau2|chr18 (45433434-45433814)
               

               
               10-392, gnl|Hg17|chr19 (45914858-45915261)
               

               
               10-392, gnl|Mm7|chr7 (24147369-24146962)

	10-392, gnl\|bosTau2\|chr18 (45433434-45433814)
	10-392, gnl\|Hg17\|chr19 (45914858-45915261)
	10-392, gnl\|Mm7\|chr7 (24147369-24146962)