Non-Coding RNA Search

Ss1.1-Ova1-OVRM10192D04.5

Sequence:


               
               ATTTGCTGGGCACTAACACTGCCTCTTCTGTTTTCTCATTTCTTGTGAAAGGTAAGTCAG
GAGTTCAGTTCAGTTCCACTTAAATTAACAACAGATGTCTCAGTTCCACGTGGCTAGCAT
ATACAGAGAGAAGTGACATGTTCTGAAAGGAATTGTCTGATTTAGAGGAGACCACAAATA
AATAAACAGTACTAGTCTCAAGTACTGAGTATCAAATGAATGAAATAAAGAATGAGGCAT
TTCATTCAATGAATCAATGAAGTCTGAGAAAGAAGAGACATGGCTCTAATGATTAATTTT
CATTAATCTGTTAAACTACTACATGCCAGGCACATGACTTCAGAGAAGATAAAATTTAGC
ATATTAAGATGGGGATTAAAAGAGATACACATCTTTAAATCCTCCTTTTCCTTGATTGCT
TTTTCTTTTCAAGTGTTTGTTGTTCTGCGCCTGGCATAGCTTGAGGCAGAAAAGAATACC
TTGTTTTAAATTGGTCCTACAGAAAAATAATGTTTAAAAAGAGGGTGTCTCAAGAGAATC
TGTTGTATAGCCCTTTTGTCAGAGCTTTGTTTGTTCTAGACTCTTGACTCTGAAGTCCTT
TAACATAAACCGTCACCTTTTGCCTTCACAGGATGGTTCCCACATCAGTAGAAAGACTCC
GAGAAGGAGGGAGCATCCCCAAGGTCCTCCGAAGCAGTGTGAGGGTGGCCCAGAAAGGAG
AGCCTTCCCCCACGTGGGAGAGTAACATCACAGAAAAAGACTCAGGTGAGCCCATGGCCT
TCTCCTGCCAACCAGGTTCAGGGACACATGAGCACCAAATGCTGGGCTGAGGTGAGTTTC
TTTCTTAGGCACTTGGGCTCCCCTGTGTGCAGAGTTTCCAGTATAGTCTTGCTTTCACTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTTGCTGGGCACTAACACTGCCTCTTCTGTTTTCTCATTTCTTGTGAAAGGTAAGTCAG
GAGTTCAGTTCAGTTCCACTTAAATTAACAACAGATGTCTCAGTTCCACGTGGCTAGCAT
ATACAGAGAGAAGTGACATGTTCTGAAAGGAATTGTCTGATTTAGAGGAGACCACAAATA
AATAAACAGTACTAGTCTCAAGTACTGAGTATCAAATGAATGAAATAAAGAATGAGGCAT
TTCATTCAATGAATCAATGAAGTCTGAGAAAGAAGAGACATGGCTCTAATGATTAATTTT
CATTAATCTGTTAAACTACTACATGCCAGGCACATGACTTCAGAGAAGATAAAATTTAGC
ATATTAAGATGGGGATTAAAAGAGATACACATCTTTAAATCCTCCTTTTCCTTGATTGCT
TTTTCTTTTCAAGTGTTTGTTGTTCTGCGCCTGGCATAGCTTGAGGCAGAAAAGAATACC
TTGTTTTAAATTGGTCCTACAGAAAAATAATGTTTAAAAAGAGGGTGTCTCAAGAGAATC
TGTTGTATAGCCCTTTTGTCAGAGCTTTGTTTGTTCTAGACTCTTGACTCTGAAGTCCTT
TAACATAAACCGTCACCTTTTGCCTTCACAGGATGGTTCCCACATCAGTAGAAAGACTCC
GAGAAGGAGGGAGCATCCCCAAGGTCCTCCGAAGCAGTGTGAGGGTGGCCCAGAAAGGAG
AGCCTTCCCCCACGTGGGAGAGTAACATCACAGAAAAAGACTCAGGTGAGCCCATGGCCT
TCTCCTGCCAACCAGGTTCAGGGACACATGAGCACCAAATGCTGGGCTGAGGTGAGTTTC
TTTCTTAGGCACTTGGGCTCCCCTGTGTGCAGAGTTTCCAGTATAGTCTTGCTTTCACTC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               330-441, - strand, RNAz p=0.940326
               

               
               637-756, - strand, RNAz p=0.898637

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               330-441, - strand, RNAz p=0.940326
               

               
               637-756, - strand, RNAz p=0.898637

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

Help | Less info


               
               1-813, gnl|bosTau2|chr22 (14544090-14543272)
               

               
               1-813, gnl|Hg17|chr3 (9490485-9491313)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-813, gnl|bosTau2|chr22 (14544090-14543272)
               

               
               1-813, gnl|Hg17|chr3 (9490485-9491313)

	330-441, - strand, RNAz p=0.940326
	637-756, - strand, RNAz p=0.898637

	1-813, gnl\|bosTau2\|chr22 (14544090-14543272)
	1-813, gnl\|Hg17\|chr3 (9490485-9491313)