Ss1.1-Ova1-OVRM10193A01.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTATCTCGAATGTGACTTTCTTGGGACAACTAGGAAATTTTAATATAGCACATAACTTTA ACATAATACAAGGAACTTGTATTTGTGGGTTGTAATAGTGCCATAAATGGATCTCATTCA CTGATTACCAAAGCTATGTCATCCATGGCTGCCTGGAGAATAACCCAACCTTGGAGAGAT CTATTGCTTTATTTAATGGAATCTCTAAGTGGGTCCAGTTGATGGTTCTTAGCAAACCAA CCCCTCAGCAAAGGGCAGAAGTCATCACAAAGTTTATCAATGTTGCCAAGAAGCTCCTTC AGCTCAAAAATTTTAACACCCTGATGGCTGTGGTGGGAGGCCTTAGTCATAGTTCCATTT CCCGGCTCAAAGAGACCCATTCTCATCTTTCTTCAGAAGTTACCAAGAACTGGAATGAAA TGACGGAGCTGGTCTCCTCCAACGGCAATTACTGTAATTACCGCAAGGCCTTTGCCGACT GCGATGGCTTCAAAATCCCAATCCTTGGCGTCCACTTGAAAGACTTGATAGCTGTCCATG TCATTTTCCCAGACTGGACGGAGGAGAACAAAGTGAACATTGTGAAAATGCATCAGCTCT CCGTTACCCTGAGTGAACTGGTCTCCCTGCAGAATGCCTCTCACCACTTAGAACCCAACC TGGATTTGATCAACTTGCTCACGCTTTCTCTGGACCTCTATCACACAGAAGATGATATTT ACAAACTATCACTGGTGCTGGAGCCTAGAAATTCTAAATCGCCTACCTCCCCTACGACAC CCACCAAGCCCATGGTGCCTCTGGAGTGGGCCTCAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTATCTCGAATGTGACTTTCTTGGGACAACTAGGAAATTTTAATATAGCACATAACTTTA ACATAATACAAGGAACTTGTATTTGTGGGTTGTAATAGTGCCATAAATGGATCTCATTCA CTGATTACCAAAGCTATGTCATCCATGGCTGCCTGGAGAATAACCCAACCTTGGAGAGAT CTATTGCTTTATTTAATGGAATCTCTAAGTGGGTCCAGTTGATGGTTCTTAGCAAACCAA CCCCTCAGCAAAGGGCAGAAGTCATCACAAAGTTTATCAATGTTGCCAAGAAGCTCCTTC AGCTCAAAAATTTTAACACCCTGATGGCTGTGGTGGGAGGCCTTAGTCATAGTTCCATTT CCCGGCTCAAAGAGACCCATTCTCATCTTTCTTCAGAAGTTACCAAGAACTGGAATGAAA TGACGGAGCTGGTCTCCTCCAACGGCAATTACTGTAATTACCGCAAGGCCTTTGCCGACT GCGATGGCTTCAAAATCCCAATCCTTGGCGTCCACTTGAAAGACTTGATAGCTGTCCATG TCATTTTCCCAGACTGGACGGAGGAGAACAAAGTGAACATTGTGAAAATGCATCAGCTCT CCGTTACCCTGAGTGAACTGGTCTCCCTGCAGAATGCCTCTCACCACTTAGAACCCAACC TGGATTTGATCAACTTGCTCACGCTTTCTCTGGACCTCTATCACACAGAAGATGATATTT ACAAACTATCACTGGTGCTGGAGCCTAGAAATTCTAAATCGCCTACCTCCCCTACGACAC CCACCAAGCCCATGGTGCCTCTGGAGTGGGCCTCAG |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 117-235, + strand, RNAz p=0.990044 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 117-235, + strand, RNAz p=0.990044 |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 117-290, gnl|bosTau2|chr11 (12916122-12915949) | |
| 117-290, gnl|canFam2|chr17 (29730248-29730450) | |
| 117-290, gnl|danRer3|chr17 (17208016-17207817) | |
| 117-290, gnl|dasNov1|scaffold_618 (51361-51162) | |
| 117-290, gnl|echTel1|scaffold_319425 (88907-88708) | |
| 117-290, gnl|fr1|chrUn (116943230-116943035) | |
| 117-290, gnl|galGal2|chr3 (27383958-27383760) | |
| 117-290, gnl|hg17|chr2 (33660576-33660774) | |
| 117-290, gnl|Hg17|chr2 (33660597-33660770) | |
| 117-290, gnl|loxAfr1|scaffold_49254 (11977-11779) | |
| 117-290, gnl|mm7|chr17 (73790663-73790861) | |
| 117-290, gnl|Mm7|chr17 (73790684-73790857) | |
| 117-290, gnl|monDom2|scaffold_1 (140341353-140341155) | |
| 117-290, gnl|oryCun1|scaffold_198432 (133904-133706) | |
| 117-290, gnl|panTro1|chr12 (34687735-34687933) | |
| 117-290, gnl|rheMac2|chr13 (33501790-33501988) | |
| 117-290, gnl|rn3|chr6 (19841601-19841403) | |
| 117-290, gnl|tetNig1|chr10 (4416758-4416953) | |
| 117-290, gnl|xenTro1|scaffold_581 (114965-115159) | |
| 406-668, gnl|bosTau2|chr11 (12911947-12911685) | |
| 406-668, gnl|canFam2|chr17 (29733113-29733413) | |
| 406-668, gnl|danRer3|chr17 (17205013-17204713) | |
| 406-668, gnl|dasNov1|scaffold_618 (46343-46043) | |
| 406-668, gnl|echTel1|scaffold_319425 (85246-84946) | |
| 406-668, gnl|fr1|chrUn (116942169-116941879) | |
| 406-668, gnl|galGal2|chr3 (27382950-27382654) | |
| 406-668, gnl|hg17|chr2 (33663841-33664141) | |
| 406-668, gnl|Hg17|chr2 (33663853-33664115) | |
| 406-668, gnl|loxAfr1|scaffold_6784 (18343-18047) | |
| 406-668, gnl|mm7|chr17 (73793725-73794025) | |
| 406-668, gnl|Mm7|chr17 (73793737-73793999) | |
| 406-668, gnl|monDom2|scaffold_1 (140338583-140338283) | |
| 406-668, gnl|oryCun1|scaffold_198432 (130310-130010) | |
| 406-668, gnl|panTro1|chr12 (34691028-34691328) | |
| 406-668, gnl|rheMac2|chr13 (33505039-33505339) | |
| 406-668, gnl|rn3|chr6 (19838515-19838215) | |
| 406-668, gnl|tetNig1|chr10 (4417837-4418129) | |
| 406-668, gnl|xenTro1|scaffold_581 (118044-118330) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 117-290, gnl|bosTau2|chr11 (12916122-12915949) | |
| 117-290, gnl|canFam2|chr17 (29730248-29730450) | |
| 117-290, gnl|danRer3|chr17 (17208016-17207817) | |
| 117-290, gnl|dasNov1|scaffold_618 (51361-51162) | |
| 117-290, gnl|echTel1|scaffold_319425 (88907-88708) | |
| 117-290, gnl|fr1|chrUn (116943230-116943035) | |
| 117-290, gnl|galGal2|chr3 (27383958-27383760) | |
| 117-290, gnl|hg17|chr2 (33660576-33660774) | |
| 117-290, gnl|Hg17|chr2 (33660597-33660770) | |
| 117-290, gnl|loxAfr1|scaffold_49254 (11977-11779) | |
| 117-290, gnl|mm7|chr17 (73790663-73790861) | |
| 117-290, gnl|Mm7|chr17 (73790684-73790857) | |
| 117-290, gnl|monDom2|scaffold_1 (140341353-140341155) | |
| 117-290, gnl|oryCun1|scaffold_198432 (133904-133706) | |
| 117-290, gnl|panTro1|chr12 (34687735-34687933) | |
| 117-290, gnl|rheMac2|chr13 (33501790-33501988) | |
| 117-290, gnl|rn3|chr6 (19841601-19841403) | |
| 117-290, gnl|tetNig1|chr10 (4416758-4416953) | |
| 117-290, gnl|xenTro1|scaffold_581 (114965-115159) | |
| 406-668, gnl|bosTau2|chr11 (12911947-12911685) | |
| 406-668, gnl|canFam2|chr17 (29733113-29733413) | |
| 406-668, gnl|danRer3|chr17 (17205013-17204713) | |
| 406-668, gnl|dasNov1|scaffold_618 (46343-46043) | |
| 406-668, gnl|echTel1|scaffold_319425 (85246-84946) | |
| 406-668, gnl|fr1|chrUn (116942169-116941879) | |
| 406-668, gnl|galGal2|chr3 (27382950-27382654) | |
| 406-668, gnl|hg17|chr2 (33663841-33664141) | |
| 406-668, gnl|Hg17|chr2 (33663853-33664115) | |
| 406-668, gnl|loxAfr1|scaffold_6784 (18343-18047) | |
| 406-668, gnl|mm7|chr17 (73793725-73794025) | |
| 406-668, gnl|Mm7|chr17 (73793737-73793999) | |
| 406-668, gnl|monDom2|scaffold_1 (140338583-140338283) | |
| 406-668, gnl|oryCun1|scaffold_198432 (130310-130010) | |
| 406-668, gnl|panTro1|chr12 (34691028-34691328) | |
| 406-668, gnl|rheMac2|chr13 (33505039-33505339) | |
| 406-668, gnl|rn3|chr6 (19838515-19838215) | |
| 406-668, gnl|tetNig1|chr10 (4417837-4418129) | |
| 406-668, gnl|xenTro1|scaffold_581 (118044-118330) |