Ss1.1-Ova1-OVRM10193B03.5
|
AATAATAAATCAAACCCTGTCCCTTCTTGCTCAAAACCCTCCCGTGGCTCTCCATTGCTC
TTATACCCAAACCTCCAGCCCTCCCTGAAGCTCAGAGGACCCGGAGTGGCCCTTCCTCTG
CAGCCTGTCCCGCTCTGGCCTCCTCACTCCAGCCTTGTGGATGCATCACCTTCTTCTTCC
TCCTTTGCACCTGCCTTTCCTTCTGCCTGGAACTTACTTCTTGTCTTGGCCCTCAGATCT
CAGTTCAGAGAGAGCCCCCTGGCCACCTGACCTTCTGACTCTTGGGGCTCCCCCATTATG
TGAACCCTGCCCTAGCCAGGATGTCCTTGTCTAAAATGGGGACAGATCGAGAAGGGGCAA
GACTTGGATCTTCCAGGCCCAGAGACTCGTGTCCAAGTCCCATGTTCCCATGGGACTCCA
GGCATGGGTGGGTATTTCCGGAGTCATCTTGGCACCAAGACCTCCGGGCCAGTGCCCTCC
TTCTGTCCCTAGGGACCCGTCATGGCGGGGATAACACATCCCAGCCGTGGGAACTAGCCC
GATTCCGGCCAGGGATTAAAATTAGCCCCAGAGGTTAAATTTAGGAAGCCAAGCTGGAGC
TGGGGGCCAAGGTGGGGGCTCTCGCCGGCCTGGGCTCTGCATAGCTGTGACTGCTCAGAG
ATCAGGCCCAGAAAAACTGGAGGGAGTGTCTGGGGTCCCATAGCAGGCCGTGTGGGACAG
GCTGGGACATCTCATACTCACAGACCTGGGTCTCTGGGAAGATGAGATGTCTCCCCTCAG
GCTGGGGTTTGGGAAGCAGGTGTGGCGACTCCCAGAGAAGACCCATATCTCCGTACACTT |
Blue-coloured subsequences are predicted RNA structures by RNAz
|
AATAATAAATCAAACCCTGTCCCTTCTTGCTCAAAACCCTCCCGTGGCTCTCCATTGCTC
TTATACCCAAACCTCCAGCCCTCCCTGAAGCTCAGAGGACCCGGAGTGGCCCTTCCTCTG
CAGCCTGTCCCGCTCTGGCCTCCTCACTCCAGCCTTGTGGATGCATCACCTTCTTCTTCC
TCCTTTGCACCTGCCTTTCCTTCTGCCTGGAACTTACTTCTTGTCTTGGCCCTCAGATCT
CAGTTCAGAGAGAGCCCCCTGGCCACCTGACCTTCTGACTCTTGGGGCTCCCCCATTATG
TGAACCCTGCCCTAGCCAGGATGTCCTTGTCTAAAATGGGGACAGATCGAGAAGGGGCAA
GACTTGGATCTTCCAGGCCCAGAGACTCGTGTCCAAGTCCCATGTTCCCATGGGACTCCA
GGCATGGGTGGGTATTTCCGGAGTCATCTTGGCACCAAGACCTCCGGGCCAGTGCCCTCC
TTCTGTCCCTAGGGACCCGTCATGGCGGGGATAACACATCCCAGCCGTGGGAACTAGCCC
GATTCCGGCCAGGGATTAAAATTAGCCCCAGAGGTTAAATTTAGGAAGCCAAGCTGGAGC
TGGGGGCCAAGGTGGGGGCTCTCGCCGGCCTGGGCTCTGCATAGCTGTGACTGCTCAGAG
ATCAGGCCCAGAAAAACTGGAGGGAGTGTCTGGGGTCCCATAGCAGGCCGTGTGGGACAG
GCTGGGACATCTCATACTCACAGACCTGGGTCTCTGGGAAGATGAGATGTCTCCCCTCAG
GCTGGGGTTTGGGAAGCAGGTGTGGCGACTCCCAGAGAAGACCCATATCTCCGTACACTT |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
427-521, + strand, RNAmicro p=0.999999 |
|
416-526, - strand, RNAmicro p=0.998985 |
|
760-817, + strand, RNAmicro p=0.990337 |
|
226-348, - strand, RNAmicro p=0.922529 |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
|
427-521, + strand, RNAmicro p=0.999999 |
|
416-526, - strand, RNAmicro p=0.998985 |
|
760-817, + strand, RNAmicro p=0.990337 |
|
226-348, - strand, RNAmicro p=0.922529 |
|
329-672, BP460293 full-length enriched swine cDNA library, adult ovary Sus
(dbj|BP460293.1|), blast E-value=0, identity=100% |
PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
|
329-672, BP460293 full-length enriched swine cDNA library, adult ovary Sus
(dbj|BP460293.1|), blast E-value=0, identity=100% |
|
16-840, gnl|bosTau2|chr7 (2599737-2598927) |
|
16-840, gnl|canFam2|chr20 (47014806-47013913) |
|
16-840, gnl|Hg17|chr19 (19125232-19123638) |
|
16-840, gnl|hg17|chr21 (10186485-10187383) |
|
16-840, gnl|loxAfr1|scaffold_28663 (21154-20337) |
|
16-840, gnl|panTro1|chr23 (15743827-15744727) |
|
16-840, gnl|rheMac2|chr10 (61555028-61555948) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
16-840, gnl|bosTau2|chr7 (2599737-2598927) |
|
16-840, gnl|canFam2|chr20 (47014806-47013913) |
|
16-840, gnl|Hg17|chr19 (19125232-19123638) |
|
16-840, gnl|hg17|chr21 (10186485-10187383) |
|
16-840, gnl|loxAfr1|scaffold_28663 (21154-20337) |
|
16-840, gnl|panTro1|chr23 (15743827-15744727) |
|
16-840, gnl|rheMac2|chr10 (61555028-61555948) |
