Non-Coding RNA Search

Ss1.1-Ova1-OVRM10194B11.5

Sequence:


               
               TGCTCCNGGCAA------------CGGATCTGTTNGCCGGCGCCGCCTATGCANCCAACA
TCCTGCTGTCAGGGCCGCTCACACTGCGCCTGTCGCCCGCGCTCTGGTTCGCGCGTGAGG
GAGGCGTTTTCGTGGCGCTCGCCGCATCGGTGCTGAGCCTCTTGGCCATAGCGTCGAGCG
CCTCCTCACCATGGAGCGCCGAGGACCCGCGCCCGCCGCGCGTCGGGGGCGCACGCTGGC
GCTGGCCGCCGGCGCCTGGGGCGTGTCGCTGCTCCTCGGGCTACTGCCGGCACTAGGCTG
GAATTGCCTGGGGCGTCTGGAAGCCTGCTCCACGGTCCTGCCACTCTATGCCAAGGCCTA
CGTGCTCTTCTGCGTGCTCGCTTTCGTGGGCATCCTGGCCGCCATCTGTGGACTCTATGC
ACGCATCTACTGCCAGGTGCGTGCCAAAGCACAGCGCCTGCGGGTGCGCCCTGGGGCTGG
AGAGGGCACCTCCGCCCGGGCGCGCGGGACGCCGCGTTCGTTGGCGCTGTTGCGCACGCT
CAGCGTGGTGCTCGTGGCCTTCGTGGCATGTTGGGGCCCTCTCTTCTTGCTGCTCTTGCT
GGACGTGGCGTGCCCCGCGCGCGCCTGCCCCGTGCTCCTGCAGGCAGACCCCTTTCTGGG
TCTGGCCATGGCCAACTCACTTCTGAACCCCATCATCTACACATTCACCAACCGCGACCT
CCGCCACGCACTCCTGCGCCTCATCTGCTGCGGCCGCCGCCCCTGCTGGGGAGGCTCTGG
CACCTCCCGGAGTCCGGGGAGCACCCTTGGGGCTTCTGGCGGCCTGCACCGCTGGCTACC
TCCCGGCATGGACCGCAGCTCTAGCCGCTCCGAGCGCTCGTCGCCCCAGCGGGACGGACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCTCCNGGCAA------------CGGATCTGTTNGCCGGCGCCGCCTATGCANCCAACA
TCCTGCTGTCAGGGCCGCTCACACTGCGCCTGTCGCCCGCGCTCTGGTTCGCGCGTGAGG
GAGGCGTTTTCGTGGCGCTCGCCGCATCGGTGCTGAGCCTCTTGGCCATAGCGTCGAGCG
CCTCCTCACCATGGAGCGCCGAGGACCCGCGCCCGCCGCGCGTCGGGGGCGCACGCTGGC
GCTGGCCGCCGGCGCCTGGGGCGTGTCGCTGCTCCTCGGGCTACTGCCGGCACTAGGCTG
GAATTGCCTGGGGCGTCTGGAAGCCTGCTCCACGGTCCTGCCACTCTATGCCAAGGCCTA
CGTGCTCTTCTGCGTGCTCGCTTTCGTGGGCATCCTGGCCGCCATCTGTGGACTCTATGC
ACGCATCTACTGCCAGGTGCGTGCCAAAGCACAGCGCCTGCGGGTGCGCCCTGGGGCTGG
AGAGGGCACCTCCGCCCGGGCGCGCGGGACGCCGCGTTCGTTGGCGCTGTTGCGCACGCT
CAGCGTGGTGCTCGTGGCCTTCGTGGCATGTTGGGGCCCTCTCTTCTTGCTGCTCTTGCT
GGACGTGGCGTGCCCCGCGCGCGCCTGCCCCGTGCTCCTGCAGGCAGACCCCTTTCTGGG
TCTGGCCATGGCCAACTCACTTCTGAACCCCATCATCTACACATTCACCAACCGCGACCT
CCGCCACGCACTCCTGCGCCTCATCTGCTGCGGCCGCCGCCCCTGCTGGGGAGGCTCTGG
CACCTCCCGGAGTCCGGGGAGCACCCTTGGGGCTTCTGGCGGCCTGCACCGCTGGCTACC
TCCCGGCATGGACCGCAGCTCTAGCCGCTCCGAGCGCTCGTCGCCCCAGCGGGACGGACT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q6QX46_CRIGR

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q6QX46_CRIGR

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               404-520, - strand, RNAz p=0.975848

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               404-520, - strand, RNAz p=0.975848

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               15-885, gnl|bosTau2|chr7 (10879238-10878367)
               

               
               15-885, gnl|Hg17|chr19 (10486444-10485573)
               

               
               15-885, gnl|Mm7|chr9 (21121443-21120563)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               15-885, gnl|bosTau2|chr7 (10879238-10878367)
               

               
               15-885, gnl|Hg17|chr19 (10486444-10485573)
               

               
               15-885, gnl|Mm7|chr9 (21121443-21120563)

	15-885, gnl\|bosTau2\|chr7 (10879238-10878367)
	15-885, gnl\|Hg17\|chr19 (10486444-10485573)
	15-885, gnl\|Mm7\|chr9 (21121443-21120563)