Non-Coding RNA Search

Ss1.1-Ova1-OVRM10194C10.5

Sequence:


               
               TTAAAAGAAAAAGAAAAAAGAAAAAGAAGGGGAAACCCTCAGAAATGTGACTACATAAAA
AGCAAAATAATCAGAAAACCTAGTTAAAAGACAGGGAACATGCTGGGAAGAATATTTCAA
GCTACGTCAGTAGGATGCTCTGAGCTGCAGGTAAACCTTTACAGAAAACCCAGTATGGCT
TAAATAATAAGGAAGTTTGCAACCTTGTATCACTGAAAATACAAAAGTAGAACAAGTTCC
TGACAGTGAGATCAGTGACTCATTGATGCCATCAAAGGCCCAGAATCTTCTCTGCCACCA
TAAGTGGCCACCATAAGTGTTCTCAGGTTCCCTTCTGGGTTGCAGCAAGGTTGCTTGGAG
TAGTAAGTAGGTGAGGCCATGTGCCTCCTTGCTTATATTCAGCTGAAGGAAGCTGTGGAA
TATAAATACCAATCTGATTGGAACAGGGTAGGTCTCGCCCCCACCCTGGACCACCATGCT
TGCGGGTATGTTGTGATCTGGTGGGCTTTGCGATCAGGATCCTCGGGGGCAGGGGGCGGG
AGGGACACCCGGCAGGGTCAAGTTTCCCGTAGGAAGATGGGAGTGGATGTTGGGTAGGCA
CCCAACTGGGTCCGCTCCTTCAGCATAGATAGGGCGTTCGATTTCATGTGTAAAATGTAA
TTGAATCATTGACAGAAAGCCCCAGGAGAAGGGCAGTTTTCCCATCAGAGCGAATTATAG
GTGTTCAAAGCAGACTTTTGGAAGAACAAGCCAGGGCCTGCTTTATTAACACCTGTTTGT
GTCCTTGACAGAGACTCCGGGGACGTCGCGGCTCTCAGAGGGTACGTTCAGCCTGGAGGC
TTCCTTCTGTTCTCTTGACTCTAACTTTCGTCTTCGGGCCAGCCACTCGGTCCCTGACAC
GGTGGGTACTTTTCTCCTGTGATTTAGATCCCGGAAATTTAACATCCTGGGCACCAACAC
GAAAGTGATGAATATGGAAGAGTCCAACAACGGCAGCCTCTCCGCAGAGTTCAAACACCT
GGTACTCGGGGGAGCCCGGACCCCCCTTCTCCTGGGGCCTCTGGCGGAGGGTGGGGTTGG
GGGGAGCCTCCCGTGACAGCCCTGTCCTTTGCTTTCCTTACAGACCCTGAGAGAGCAGAG
ATGTGGGAACGGGGGCCGAGCCAATTGCGACGGTAGTTGGGTAGGGGATGAAAGCCCACC
TGTAGGAACCTTGTCTTGGAGGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTAAAAGAAAAAGAAAAAAGAAAAAGAAGGGGAAACCCTCAGAAATGTGACTACATAAAA
AGCAAAATAATCAGAAAACCTAGTTAAAAGACAGGGAACATGCTGGGAAGAATATTTCAA
GCTACGTCAGTAGGATGCTCTGAGCTGCAGGTAAACCTTTACAGAAAACCCAGTATGGCT
TAAATAATAAGGAAGTTTGCAACCTTGTATCACTGAAAATACAAAAGTAGAACAAGTTCC
TGACAGTGAGATCAGTGACTCATTGATGCCATCAAAGGCCCAGAATCTTCTCTGCCACCA
TAAGTGGCCACCATAAGTGTTCTCAGGTTCCCTTCTGGGTTGCAGCAAGGTTGCTTGGAG
TAGTAAGTAGGTGAGGCCATGTGCCTCCTTGCTTATATTCAGCTGAAGGAAGCTGTGGAA
TATAAATACCAATCTGATTGGAACAGGGTAGGTCTCGCCCCCACCCTGGACCACCATGCT
TGCGGGTATGTTGTGATCTGGTGGGCTTTGCGATCAGGATCCTCGGGGGCAGGGGGCGGG
AGGGACACCCGGCAGGGTCAAGTTTCCCGTAGGAAGATGGGAGTGGATGTTGGGTAGGCA
CCCAACTGGGTCCGCTCCTTCAGCATAGATAGGGCGTTCGATTTCATGTGTAAAATGTAA
TTGAATCATTGACAGAAAGCCCCAGGAGAAGGGCAGTTTTCCCATCAGAGCGAATTATAG
GTGTTCAAAGCAGACTTTTGGAAGAACAAGCCAGGGCCTGCTTTATTAACACCTGTTTGT
GTCCTTGACAGAGACTCCGGGGACGTCGCGGCTCTCAGAGGGTACGTTCAGCCTGGAGGC
TTCCTTCTGTTCTCTTGACTCTAACTTTCGTCTTCGGGCCAGCCACTCGGTCCCTGACAC
GGTGGGTACTTTTCTCCTGTGATTTAGATCCCGGAAATTTAACATCCTGGGCACCAACAC
GAAAGTGATGAATATGGAAGAGTCCAACAACGGCAGCCTCTCCGCAGAGTTCAAACACCT
GGTACTCGGGGGAGCCCGGACCCCCCTTCTCCTGGGGCCTCTGGCGGAGGGTGGGGTTGG
GGGGAGCCTCCCGTGACAGCCCTGTCCTTTGCTTTCCTTACAGACCCTGAGAGAGCAGAG
ATGTGGGAACGGGGGCCGAGCCAATTGCGACGGTAGTTGGGTAGGGGATGAAAGCCCACC
TGTAGGAACCTTGTCTTGGAGGCT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               112-224, - strand, RNAz p=0.622951
               

               
               766-885, - strand, RNAz p=0.983084

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               112-224, - strand, RNAz p=0.622951
               

               
               766-885, - strand, RNAz p=0.983084

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               33-1195, gnl|bosTau2|chr19 (36824384-36823217)
               

               
               33-1195, gnl|Mm7|chr11 (101008664-101007462)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               33-1195, gnl|bosTau2|chr19 (36824384-36823217)
               

               
               33-1195, gnl|Mm7|chr11 (101008664-101007462)

	112-224, - strand, RNAz p=0.622951
	766-885, - strand, RNAz p=0.983084

	33-1195, gnl\|bosTau2\|chr19 (36824384-36823217)
	33-1195, gnl\|Mm7\|chr11 (101008664-101007462)