Non-Coding RNA Search

Ss1.1-Ova1-OVRM10196C11.5

Sequence:


               
               GCAGTTATTTTAGATTTTACTAAGAAGTGAGTTAACATTTTTCAACATTCCCTTCTTTGT
TTTAAAGAAAGCTCTGGTTTTGTTTCATTTTCATCTGGAGACTTAAATGACACCAAGCAA
AGCCTACTTAGTTTAGATTTCCAGAAATCAAATGGTGAAAAAGCAAGCATGAAATTTTCA
GGCTTGTATTGTTTTCTTCTGCTTCTCATTTGTCAAACTGACTATGGACAAAATGAAGAA
ACTTCTAGAAAGCAAAGAAGGAAGATGTATTATAGAAGACTGAGAAAAAGTTCCTTGCCC
ACCCACAGATCCAGTAGACAGCTTGGAATTCAGCAAATGATAGCTACACCAGCAGCAACA
CTTCCCATGGTTAACTTGGATTATAGCACAGAGGAGAAATTTGAATCCTTTTTAAGTGTT
CCTGGGGTAGAATCAAGCTATAATGTGTTACCAGAAAAGAAAGGACACTGTTTGGCAAAT
GGGATGATCATGTATAACAGAGCTGTATGGTCTCCAGAGCCCTGCACTACCTGCCTTTGT
TCGAATGGAAGAGTCCTTTGTGATGAAACCAAGTGCCACCCTCAGCTGTGCTCACGAACA
GTTATACCTGAAGGAGAATGCTGCCCTGTCTGCTCTGATACTGCCTCCGATTTGCTACTC
AGTAGTATAGCATTAAATGACAGAACTGAATTTTCTGGTGATTCTTCAGAACAAAGAGAA
CGTAACAATTTACTTCATAAGCAACAGCCGCCTTCTTGGGTGGAAATGGATCAAGTAATG
AGAAAAGAGCAACACCAATATGAGGAAGATGAAGAAGAAATTAAACAAGTTGAAGAGAAG
GAGCAAAAGAAAAATACCCCTAGACGTGGAGACTGGGGGATACCTTCCAAGGAGGGGCAG
AGCAGAGAAGCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAGTTATTTTAGATTTTACTAAGAAGTGAGTTAACATTTTTCAACATTCCCTTCTTTGT
TTTAAAGAAAGCTCTGGTTTTGTTTCATTTTCATCTGGAGACTTAAATGACACCAAGCAA
AGCCTACTTAGTTTAGATTTCCAGAAATCAAATGGTGAAAAAGCAAGCATGAAATTTTCA
GGCTTGTATTGTTTTCTTCTGCTTCTCATTTGTCAAACTGACTATGGACAAAATGAAGAA
ACTTCTAGAAAGCAAAGAAGGAAGATGTATTATAGAAGACTGAGAAAAAGTTCCTTGCCC
ACCCACAGATCCAGTAGACAGCTTGGAATTCAGCAAATGATAGCTACACCAGCAGCAACA
CTTCCCATGGTTAACTTGGATTATAGCACAGAGGAGAAATTTGAATCCTTTTTAAGTGTT
CCTGGGGTAGAATCAAGCTATAATGTGTTACCAGAAAAGAAAGGACACTGTTTGGCAAAT
GGGATGATCATGTATAACAGAGCTGTATGGTCTCCAGAGCCCTGCACTACCTGCCTTTGT
TCGAATGGAAGAGTCCTTTGTGATGAAACCAAGTGCCACCCTCAGCTGTGCTCACGAACA
GTTATACCTGAAGGAGAATGCTGCCCTGTCTGCTCTGATACTGCCTCCGATTTGCTACTC
AGTAGTATAGCATTAAATGACAGAACTGAATTTTCTGGTGATTCTTCAGAACAAAGAGAA
CGTAACAATTTACTTCATAAGCAACAGCCGCCTTCTTGGGTGGAAATGGATCAAGTAATG
AGAAAAGAGCAACACCAATATGAGGAAGATGAAGAAGAAATTAAACAAGTTGAAGAGAAG
GAGCAAAAGAAAAATACCCCTAGACGTGGAGACTGGGGGATACCTTCCAAGGAGGGGCAG
AGCAGAGAAGCG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55958052|emb|CAI12588.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55958052|emb|CAI12588.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               722-841, + strand, RNAz p=0.988306

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               722-841, + strand, RNAz p=0.988306

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               143-462, gnl|bosTau2|chr7 (51854915-51854593)
               

               
               143-462, gnl|Hg17|chr9 (92364732-92364350)
               

               
               143-462, gnl|Mm7|chr13 (48998669-48998984)
               


               
               643-910, gnl|bosTau2|chr7 (51849306-51849039)
               

               
               643-910, gnl|Hg17|chr9 (92357041-92356780)
               

               
               643-910, gnl|Mm7|chr13 (49004382-49004633)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               143-462, gnl|bosTau2|chr7 (51854915-51854593)
               

               
               143-462, gnl|Hg17|chr9 (92364732-92364350)
               

               
               143-462, gnl|Mm7|chr13 (48998669-48998984)
               


               
               643-910, gnl|bosTau2|chr7 (51849306-51849039)
               

               
               643-910, gnl|Hg17|chr9 (92357041-92356780)
               

               
               643-910, gnl|Mm7|chr13 (49004382-49004633)

	143-462, gnl\|bosTau2\|chr7 (51854915-51854593)
	143-462, gnl\|Hg17\|chr9 (92364732-92364350)
	143-462, gnl\|Mm7\|chr13 (48998669-48998984)

	643-910, gnl\|bosTau2\|chr7 (51849306-51849039)
	643-910, gnl\|Hg17\|chr9 (92357041-92356780)
	643-910, gnl\|Mm7\|chr13 (49004382-49004633)