Non-Coding RNA Search

Ss1.1-Ova1-OVRM10196H09.5

Sequence:


               
               AAGAAAATCCAGTCCGTATATTAGGCTTTTCCTTGAACGGTGTGGTGCCTCTGAGCAGTC
CAATCCCTGCCGCTAGCCCTGGACGCCAGTCCGTATTTTCCGCCGTCCTTTCACCTGCCT
TTCCGTAGTCCCGGCTTCGCTCCCGCAATTCTGGGGCTGGCGGAGACGGCGGAGATTTCA
GCCTTTGCCGCGACAAAGGACCGGCCTAGCGGGTCCTGAAGTCCGACCGGACGCAGGGGA
ACTCCACCTGCGTCACAGAAGCGAGGACACACCTGAACTGGGTCGCCGTGACAGAAACAG
GGAAGATTGACCAAGAGATTCACAAGTACAACACCCCTGGATTCACTGGGTGCCTCTCCA
GAGTCCAGTTCAACCAGATTGCCCCTCTCAAGGCGGCCTTGAGGCAGACAAACGCCTCTG
CCCACGTGCACGTCCAGGGGGAGCTGGTGGAGTCCAACTGCGGGGCCTCCCCGCTCACCC
TCTCACCCATGTCGTCCGCCACCGACCCCTGGCACCTAGACCACCTGGATTCAGCCAGTG
CTGATTTTCCATATAATCCAGGACAAGGCCAGGCTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGAAAATCCAGTCCGTATATTAGGCTTTTCCTTGAACGGTGTGGTGCCTCTGAGCAGTC
CAATCCCTGCCGCTAGCCCTGGACGCCAGTCCGTATTTTCCGCCGTCCTTTCACCTGCCT
TTCCGTAGTCCCGGCTTCGCTCCCGCAATTCTGGGGCTGGCGGAGACGGCGGAGATTTCA
GCCTTTGCCGCGACAAAGGACCGGCCTAGCGGGTCCTGAAGTCCGACCGGACGCAGGGGA
ACTCCACCTGCGTCACAGAAGCGAGGACACACCTGAACTGGGTCGCCGTGACAGAAACAG
GGAAGATTGACCAAGAGATTCACAAGTACAACACCCCTGGATTCACTGGGTGCCTCTCCA
GAGTCCAGTTCAACCAGATTGCCCCTCTCAAGGCGGCCTTGAGGCAGACAAACGCCTCTG
CCCACGTGCACGTCCAGGGGGAGCTGGTGGAGTCCAACTGCGGGGCCTCCCCGCTCACCC
TCTCACCCATGTCGTCCGCCACCGACCCCTGGCACCTAGACCACCTGGATTCAGCCAGTG
CTGATTTTCCATATAATCCAGGACAAGGCCAGGCTA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61810233|ref|XP_584487.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61810233|ref|XP_584487.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               330-574, - strand, RNAz p=0.827979

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               330-574, - strand, RNAz p=0.827979

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               291-574, gnl|bosTau2|chr5 (6656082-6655799)
               

               
               291-574, gnl|Hg17|chr7 (147518385-147518628)
               

               
               291-574, gnl|Mm7|chr6 (47307835-47308072)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               291-574, gnl|bosTau2|chr5 (6656082-6655799)
               

               
               291-574, gnl|Hg17|chr7 (147518385-147518628)
               

               
               291-574, gnl|Mm7|chr6 (47307835-47308072)

	291-574, gnl\|bosTau2\|chr5 (6656082-6655799)
	291-574, gnl\|Hg17\|chr7 (147518385-147518628)
	291-574, gnl\|Mm7\|chr6 (47307835-47308072)