Non-Coding RNA Search

Ss1.1-Ova1-OVRM10197D12.5

Sequence:


               
               ATCAGCTGGCTTGTTTATGGTTTGATAGAGCAGTGTTAACGTTTAAGTATATTAATCATA
TATAAATGTGATCTTGTATGCAAATCATTAGCCGTGGCATTATACATTTATTTTAAGTTT
TAAATTCATTTGTATTAACTTTCTCTTAAAGATTTACTATAAAAATTTTTCTTCTGCAGT
TCACAGCATTAACAAAATGGATGCGGTTTTCACCCTTAAATGTTGAGTGTAAGCTATAGA
GCTATAATAACCAAAATAATACCAGCTTTTTTGTTTTACTTTGACTGTCTTGAATATTTC
ATAAAAATTAATTATAAACCACTTTATTCTAATTGGAAATGTGAAAATTTAGACTTTGGG
AGAAATAAAACCCACAAAACTAACTTAGTTTAACCCTTTGGTTTCCACTTCATTGTTTTG
ACTCTGTATTATAATAAATATTGAAAATAAATCCTGGTCAGCAGAACCATGTAAGTTAAT
GCAAGGCCTAACGCCAGGGGCAGTCATTAGTTTCTTGGTATCTTAGCTTCTGTTTCATTA
AATATGACTAGGATTAGACATTAGTTTGGGCTTGGATCATTTACTTATATAGCAATCTAG
TGTTACGAATATGACCTGTATTACCTGTTACATTGCAGGGACTTCATATGTAGTTATGAC
TTAATGGTAATGTGAAAATAAGATGAATATATTAGACGCTTGAAAAAAATTGAGATGATT
TTCAATGGATTGCTTTAAAGCAAAGTTATAGATGCCATTTTCTTAGCTGTTTTTAAATTA
AAAACTCTAATTTTAAAAACAGAAGCTTTGGTTATAAAATACAGAGTCATGAAATAATTG
GTCCAGTCCTCGACTGTCATTTATTGAAGTAACGAATAACTAGAGGTTGGTCTTTGCAGG
GACTTGTGTTTCCACGCAGTGCTCTCCTTGGCCCTGCGCCTCCTGGTGCTGAGGGTTAGT
TTTGTTCACGTTGATGGGCCGCGTAATCCTTTGAGCCAGTCAATCTCTCTCTGACCTTGT
CCTTTTTTTAATAGGTGTCTTTTCACAATGGGATCATTTTATTTACGATTCTGTCCTTGT
TACAGGACCCTCGAGTGTCTCTTTGCCACCAAGTGTGACTGGGCAGGGCCTCGAGTGCCC
GTTTGTGGTCCCTCCTCAGGGGGGCCACTCCCTCGAGACCCTGCGTGTGGCGACCTCCCT
TGGCTGGACTTGGAGATGGTTTTAGGAGGAGTGCTTGGCCCGAGCCAGCTAGCCACGAGT
TACGGGATTGGCCCAGAGATAACGCGAGTCCTCGTTGTTATTGCCGTGGCGGCGTATGTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATCAGCTGGCTTGTTTATGGTTTGATAGAGCAGTGTTAACGTTTAAGTATATTAATCATA
TATAAATGTGATCTTGTATGCAAATCATTAGCCGTGGCATTATACATTTATTTTAAGTTT
TAAATTCATTTGTATTAACTTTCTCTTAAAGATTTACTATAAAAATTTTTCTTCTGCAGT
TCACAGCATTAACAAAATGGATGCGGTTTTCACCCTTAAATGTTGAGTGTAAGCTATAGA
GCTATAATAACCAAAATAATACCAGCTTTTTTGTTTTACTTTGACTGTCTTGAATATTTC
ATAAAAATTAATTATAAACCACTTTATTCTAATTGGAAATGTGAAAATTTAGACTTTGGG
AGAAATAAAACCCACAAAACTAACTTAGTTTAACCCTTTGGTTTCCACTTCATTGTTTTG
ACTCTGTATTATAATAAATATTGAAAATAAATCCTGGTCAGCAGAACCATGTAAGTTAAT
GCAAGGCCTAACGCCAGGGGCAGTCATTAGTTTCTTGGTATCTTAGCTTCTGTTTCATTA
AATATGACTAGGATTAGACATTAGTTTGGGCTTGGATCATTTACTTATATAGCAATCTAG
TGTTACGAATATGACCTGTATTACCTGTTACATTGCAGGGACTTCATATGTAGTTATGAC
TTAATGGTAATGTGAAAATAAGATGAATATATTAGACGCTTGAAAAAAATTGAGATGATT
TTCAATGGATTGCTTTAAAGCAAAGTTATAGATGCCATTTTCTTAGCTGTTTTTAAATTA
AAAACTCTAATTTTAAAAACAGAAGCTTTGGTTATAAAATACAGAGTCATGAAATAATTG
GTCCAGTCCTCGACTGTCATTTATTGAAGTAACGAATAACTAGAGGTTGGTCTTTGCAGG
GACTTGTGTTTCCACGCAGTGCTCTCCTTGGCCCTGCGCCTCCTGGTGCTGAGGGTTAGT
TTTGTTCACGTTGATGGGCCGCGTAATCCTTTGAGCCAGTCAATCTCTCTCTGACCTTGT
CCTTTTTTTAATAGGTGTCTTTTCACAATGGGATCATTTTATTTACGATTCTGTCCTTGT
TACAGGACCCTCGAGTGTCTCTTTGCCACCAAGTGTGACTGGGCAGGGCCTCGAGTGCCC
GTTTGTGGTCCCTCCTCAGGGGGGCCACTCCCTCGAGACCCTGCGTGTGGCGACCTCCCT
TGGCTGGACTTGGAGATGGTTTTAGGAGGAGTGCTTGGCCCGAGCCAGCTAGCCACGAGT
TACGGGATTGGCCCAGAGATAACGCGAGTCCTCGTTGTTATTGCCGTGGCGGCGTATGTG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1070-1186, - strand, RNAz p=0.636889

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1070-1186, - strand, RNAz p=0.636889

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1255, gnl|bosTau2|chr12 (45972032-45970745)
               

               
               1-1255, gnl|Hg17|chr13 (110355759-110354518)
               

               
               1-1255, gnl|Mm7|chr8 (11595918-11594594)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1255, gnl|bosTau2|chr12 (45972032-45970745)
               

               
               1-1255, gnl|Hg17|chr13 (110355759-110354518)
               

               
               1-1255, gnl|Mm7|chr8 (11595918-11594594)

	1-1255, gnl\|bosTau2\|chr12 (45972032-45970745)
	1-1255, gnl\|Hg17\|chr13 (110355759-110354518)
	1-1255, gnl\|Mm7\|chr8 (11595918-11594594)