Non-Coding RNA Search

Ss1.1-Ova1-OVRM10197E01.5

Sequence:


               
               TTCCAGTCCCAGAGCTGCATATGTTTGATCACTTTTGTAAGAAGGAACCCAAGCCTGAAC
CCCTGCCCTTGGGGAGTCAGCAGGAGCAGGAGCGAGGTGGGCAGAAGACAGTGGACCCTC
ACAAGGAGCTGGATGCCAGTCGATTCTTTGGGGAAGCTTTGGAGTTCAATAGCCACCCTG
GCAACAGCATTGGAGAACCTAAGGGACTTGGCCCAGAGCTCGGCACCTGCTCATCAGTGC
CCCCTAGGCAGCGTCTGAAGCCAGCTCATTCCAAGCTGTCCTCTTGTGTTGCAGCGTTGG
TGGCCCTGCAAGCCAAACGAGTTGCTAGTGTCACCAAGGAAGATCAGTCTAGCCACACAA
AGGATCCCTCAGGGCCCACAAAAGAGGGCTCCAAAGGCAGCCCCCAAATGCCCAAGTCAC
CAAAGAGTCCCCGGAGCCCTCTGGAGGCCACTAGAAAAAGCATCAAGCCATCGGATAGCC
CTCGGAGCATCTGCAGTGACAGCAGCAGCAAAGGCTCCCCTTCTGTGGCTGCCAGCTCTC
CACCAGCGATTCCCAAAGTCAGAATCAAAACCATTAAGACATCATCAGGGGAAATCAAAC
GGACTGTCACAAGGATCCTGCCAGACCCTGATGATCCCAGTAAGTCCCCTGTTGGGTCAC
CCCTAGGAAGCACTGTTGCTGAAGCCCCGAGTGAGGTGGCAGAGGATGAGGCCACTGCCA
TGCCTGGAGAAGAGCACTTTGCTGAGGTGGGCACAAGTTCAGGGAGCCCCCAGGGTGACA
CAAAGGGGGATGAGAGTGTGATGAAACCCAGTGAATCTTCATCTTCCTGCTGCAGCTCTG
GGTCCCGAGGCTCAAAGGGGGCTGCTGCAGGGGCAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCCAGTCCCAGAGCTGCATATGTTTGATCACTTTTGTAAGAAGGAACCCAAGCCTGAAC
CCCTGCCCTTGGGGAGTCAGCAGGAGCAGGAGCGAGGTGGGCAGAAGACAGTGGACCCTC
ACAAGGAGCTGGATGCCAGTCGATTCTTTGGGGAAGCTTTGGAGTTCAATAGCCACCCTG
GCAACAGCATTGGAGAACCTAAGGGACTTGGCCCAGAGCTCGGCACCTGCTCATCAGTGC
CCCCTAGGCAGCGTCTGAAGCCAGCTCATTCCAAGCTGTCCTCTTGTGTTGCAGCGTTGG
TGGCCCTGCAAGCCAAACGAGTTGCTAGTGTCACCAAGGAAGATCAGTCTAGCCACACAA
AGGATCCCTCAGGGCCCACAAAAGAGGGCTCCAAAGGCAGCCCCCAAATGCCCAAGTCAC
CAAAGAGTCCCCGGAGCCCTCTGGAGGCCACTAGAAAAAGCATCAAGCCATCGGATAGCC
CTCGGAGCATCTGCAGTGACAGCAGCAGCAAAGGCTCCCCTTCTGTGGCTGCCAGCTCTC
CACCAGCGATTCCCAAAGTCAGAATCAAAACCATTAAGACATCATCAGGGGAAATCAAAC
GGACTGTCACAAGGATCCTGCCAGACCCTGATGATCCCAGTAAGTCCCCTGTTGGGTCAC
CCCTAGGAAGCACTGTTGCTGAAGCCCCGAGTGAGGTGGCAGAGGATGAGGCCACTGCCA
TGCCTGGAGAAGAGCACTTTGCTGAGGTGGGCACAAGTTCAGGGAGCCCCCAGGGTGACA
CAAAGGGGGATGAGAGTGTGATGAAACCCAGTGAATCTTCATCTTCCTGCTGCAGCTCTG
GGTCCCGAGGCTCAAAGGGGGCTGCTGCAGGGGCAC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               280-399, + strand, RNAz p=0.977689

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               280-399, + strand, RNAz p=0.977689

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-865, gnl|bosTau2|chr21 (12796053-12796917)
               

               
               1-865, gnl|Hg17|chr15 (83127476-83128331)
               

               
               1-865, gnl|Mm7|chr7 (76895292-76896156)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-865, gnl|bosTau2|chr21 (12796053-12796917)
               

               
               1-865, gnl|Hg17|chr15 (83127476-83128331)
               

               
               1-865, gnl|Mm7|chr7 (76895292-76896156)

	1-865, gnl\|bosTau2\|chr21 (12796053-12796917)
	1-865, gnl\|Hg17\|chr15 (83127476-83128331)
	1-865, gnl\|Mm7\|chr7 (76895292-76896156)