Non-Coding RNA Search

Ss1.1-Ova1-OVRM10200B04.5

Sequence:


               
               AAAATGCCCAGCGCGCATGCGCCCCGCCGTGGACTTGGCTTTTCGCGAAGGTCAGAATTC
CGAGACCCGCCGGCACAGACTCCTCTGATGGGGGATTGCGGACCGGCGTGCACTCTGGAA
GGCTCAACGAAGGCGTCCAGTGTACAGAAGTATCTGGTGCTTGTTTGCACAGTGGGGCTA
GGTGCTGGGCCCAGACGAGCAGGAGCAGACGTTCACCCGCAGGGATGGGCTGGAGCCAGT
GCAAGGTTCAGGGTAGGATCCTGCTCCTGACCATCTGTGCAGCTGGCATTGGTGGGACTT
TTCAATTTGGCTACAACCTCTCTATCATCAATGCCCCAACCTTGCACATTCAGGAATTCA
CCAATGAGACGTGGCAGATGCGAACTGGCCGGCCACTGCCCGATCACCTGGTGCTGCTGG
TGTGGTCCCTCATCATATCTCTGTATCCCCTGGGGGGCCTCCTTGGAGCGTTGCTTGCTG
GGCCCCTGGCCATCAAGCTGGGAAGGAAGAAGTCCCTGCTGGTGAATAACATCTTTGTGG
TGGCCGCAGCGACCCTGTTTGGCTTCAGCCGCAGAGCAGGCTCCTTTGAGATGATCATGC
TGGGAAGGTTGCTTGTGGGGGTCAGCGCACGGGTGAGCATGAATGTCCAGCCTATGTACC
TGGGGGAGAGCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAATGCCCAGCGCGCATGCGCCCCGCCGTGGACTTGGCTTTTCGCGAAGGTCAGAATTC
CGAGACCCGCCGGCACAGACTCCTCTGATGGGGGATTGCGGACCGGCGTGCACTCTGGAA
GGCTCAACGAAGGCGTCCAGTGTACAGAAGTATCTGGTGCTTGTTTGCACAGTGGGGCTA
GGTGCTGGGCCCAGACGAGCAGGAGCAGACGTTCACCCGCAGGGATGGGCTGGAGCCAGT
GCAAGGTTCAGGGTAGGATCCTGCTCCTGACCATCTGTGCAGCTGGCATTGGTGGGACTT
TTCAATTTGGCTACAACCTCTCTATCATCAATGCCCCAACCTTGCACATTCAGGAATTCA
CCAATGAGACGTGGCAGATGCGAACTGGCCGGCCACTGCCCGATCACCTGGTGCTGCTGG
TGTGGTCCCTCATCATATCTCTGTATCCCCTGGGGGGCCTCCTTGGAGCGTTGCTTGCTG
GGCCCCTGGCCATCAAGCTGGGAAGGAAGAAGTCCCTGCTGGTGAATAACATCTTTGTGG
TGGCCGCAGCGACCCTGTTTGGCTTCAGCCGCAGAGCAGGCTCCTTTGAGATGATCATGC
TGGGAAGGTTGCTTGTGGGGGTCAGCGCACGGGTGAGCATGAATGTCCAGCCTATGTACC
TGGGGGAGAGCG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|19387142|gb|AAL87108.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|19387142|gb|AAL87108.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               244-344, + strand, RNAz p=0.967469

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               244-344, + strand, RNAz p=0.967469

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               244-344, gnl|bosTau2|chr17 (41500132-41500232)
               

               
               244-344, gnl|Hg17|chr22 (22528843-22528943)
               


               
               346-506, gnl|bosTau2|chr17 (41501818-41501978)
               

               
               346-506, gnl|Hg17|chr22 (22535223-22535383)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               244-344, gnl|bosTau2|chr17 (41500132-41500232)
               

               
               244-344, gnl|Hg17|chr22 (22528843-22528943)
               


               
               346-506, gnl|bosTau2|chr17 (41501818-41501978)
               

               
               346-506, gnl|Hg17|chr22 (22535223-22535383)

	244-344, gnl\|bosTau2\|chr17 (41500132-41500232)
	244-344, gnl\|Hg17\|chr22 (22528843-22528943)

	346-506, gnl\|bosTau2\|chr17 (41501818-41501978)
	346-506, gnl\|Hg17\|chr22 (22535223-22535383)