Non-Coding RNA Search

Ss1.1-Ova1-OVRM10202F05.5

Sequence:


               
               CAGTAGCCAAAATCAAGAGAGCAGAGCCAGGAGTGATGGGAGCGAGCCCAGAGCGGGCTG
ACCGGGGGCGGGCGGTCCCAAGGTCATGAAACGGGTGCGTACCGAGCAGATCCAGATGGC
CGTGTCCTGCTACCTCAAGCGCCGGCAGTATGGGGATGCAGACGGCCCGCTGAAGCAAGG
CCTGCGACTGTCACAGAGTGCTGAGGAGATGGCGGCCAACCTTGCAGTCCAATCAGAATC
TGGTTGTGCCAACATAGTGTCTGCAGCCCCTTGCCAGGCAGAGCCCCAGCAATATGAAGT
ACAGTTTGGAAGGCTGCGGAATTTTCTTACTGACTCTGACTCCCAGCACAGCCACGAAGT
GATGCCTCTCCTCTATCCCCTCTTTGTCTACCTCCATCTCAACCTGGTCCAGAACAGTGC
GAAGAGCACGGTGGAAAGTTTCTACAGCCGCTTCCACGGGATGTTTCTGCAGAACGCCAG
CCAGAAGGACGTCATCGAGCAGCTGCAGACCACGCAGACCGTCCAGGACATCCTGTCCAA
TTTCCGGCTACGGGCCTTCCTGGACAACAAGTACGTGGTCCGTCTCCAGGAGGACAGCTA
CAACTACCTTCTCCGCTACCTCCAGAGTGACAACAACGCCGCCCTGTGCCGGGTCCTCAC
CTGGCACATCCATCTGGACGTGCAGCCCGCCAAGAGGACAGACTACCAGCTCTACGCCAG
TGGCGGCTCCTCCCGGGGCGAGGGCAGCGGCCTGGAGCCCACCGACATGCCGGCCCCCAT
CCTGCAGAATGAGGCCGCGCTAGAGGTCCTGCAGGAGAGCATTAAGCGCGTCAAGGATGG
CCCACCCTCCCTCACCACCATCTGCTTCTATGCCTTCTATAACACCGAGCAGCTTCTGAA
CACAGCGGAGATCTCCCCAGAGAGCAAGCTGCTGGCGGCTGGCTTTGACAACTCCTGTAT
AAAGCTATGGAGTTTGCGCTCCAAGAAGCTCAAGCCAGAGCCCCATCGGGTAGATGTGTC
CCGCATCCACTTGGCTTGTGATATCCTGGAGGAGGAGGATGATGAGGACGATGACGTGGG
CACGGAGATGAAGGTCCTGCGGGGACACTGTGGGCCAGTGTACAGCACGCGGTTCCTCGC
GGACAGCTCAGGGTTGCTCTCCTGCTCTGAAGATATGTCCATCCGATACTGGGACCTGGG
CAGCTTCACCAACACTGTGCTGTACCAGGGCCACGCCTACCCAGTGTGGGATGTGGACAT
TAGCCCATACAGCCTGTACTTCGCCAGCGGCTCCCACGACCGCACAGCCAGGCTGTGGTC
CTTCGATCGGACGTACCCACTGCGGATCTACGCCGGGCACCTGGCCGATGTGGACTGCGT
CAAGTTCCACCCCAACTCAAACTACTTAGCCACGGGCTCCACTGACAAGACCGTCCGGCT
GTGGAGCGCGCAGCAGGGGAACTCGGTGAGGCTCTTCACCGGCCACCGAGGCCCCGTGCT
CTCTCTGGCCTTCTCCCCCAATGGAAAGACTTGGCGTCGGCAGGCGAGGACCAGCGTCTG
AAGCTGTGGGACCTGGCATCTGGGACCCTCTTCAAAGAGCTGCGAGGCCATACAGACAAC
ATCACCAGCCTCACCTTTAGCCCTGACAGCAGCTTGATCGCGTCAGCGTCCATGGACAAT
TCAGTGCGTGTCTGGGACATCCGGAACACGCACTGCAGCGCGCCCACCGATGGCTCCTCC
AGCAAGCTGGTGGGCGTCTACACCGGCCAGATGAGCAACGTGCTGAGCGTGCAGTTCATG
GCCTGCAACCTCCTGCTGGTGACCGGAATCACACAAGAAAATCAGGAACATTGATTTTGT
AGCTGATGGAACGGACTGGGGCGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGTAGCCAAAATCAAGAGAGCAGAGCCAGGAGTGATGGGAGCGAGCCCAGAGCGGGCTG
ACCGGGGGCGGGCGGTCCCAAGGTCATGAAACGGGTGCGTACCGAGCAGATCCAGATGGC
CGTGTCCTGCTACCTCAAGCGCCGGCAGTATGGGGATGCAGACGGCCCGCTGAAGCAAGG
CCTGCGACTGTCACAGAGTGCTGAGGAGATGGCGGCCAACCTTGCAGTCCAATCAGAATC
TGGTTGTGCCAACATAGTGTCTGCAGCCCCTTGCCAGGCAGAGCCCCAGCAATATGAAGT
ACAGTTTGGAAGGCTGCGGAATTTTCTTACTGACTCTGACTCCCAGCACAGCCACGAAGT
GATGCCTCTCCTCTATCCCCTCTTTGTCTACCTCCATCTCAACCTGGTCCAGAACAGTGC
GAAGAGCACGGTGGAAAGTTTCTACAGCCGCTTCCACGGGATGTTTCTGCAGAACGCCAG
CCAGAAGGACGTCATCGAGCAGCTGCAGACCACGCAGACCGTCCAGGACATCCTGTCCAA
TTTCCGGCTACGGGCCTTCCTGGACAACAAGTACGTGGTCCGTCTCCAGGAGGACAGCTA
CAACTACCTTCTCCGCTACCTCCAGAGTGACAACAACGCCGCCCTGTGCCGGGTCCTCAC
CTGGCACATCCATCTGGACGTGCAGCCCGCCAAGAGGACAGACTACCAGCTCTACGCCAG
TGGCGGCTCCTCCCGGGGCGAGGGCAGCGGCCTGGAGCCCACCGACATGCCGGCCCCCAT
CCTGCAGAATGAGGCCGCGCTAGAGGTCCTGCAGGAGAGCATTAAGCGCGTCAAGGATGG
CCCACCCTCCCTCACCACCATCTGCTTCTATGCCTTCTATAACACCGAGCAGCTTCTGAA
CACAGCGGAGATCTCCCCAGAGAGCAAGCTGCTGGCGGCTGGCTTTGACAACTCCTGTAT
AAAGCTATGGAGTTTGCGCTCCAAGAAGCTCAAGCCAGAGCCCCATCGGGTAGATGTGTC
CCGCATCCACTTGGCTTGTGATATCCTGGAGGAGGAGGATGATGAGGACGATGACGTGGG
CACGGAGATGAAGGTCCTGCGGGGACACTGTGGGCCAGTGTACAGCACGCGGTTCCTCGC
GGACAGCTCAGGGTTGCTCTCCTGCTCTGAAGATATGTCCATCCGATACTGGGACCTGGG
CAGCTTCACCAACACTGTGCTGTACCAGGGCCACGCCTACCCAGTGTGGGATGTGGACAT
TAGCCCATACAGCCTGTACTTCGCCAGCGGCTCCCACGACCGCACAGCCAGGCTGTGGTC
CTTCGATCGGACGTACCCACTGCGGATCTACGCCGGGCACCTGGCCGATGTGGACTGCGT
CAAGTTCCACCCCAACTCAAACTACTTAGCCACGGGCTCCACTGACAAGACCGTCCGGCT
GTGGAGCGCGCAGCAGGGGAACTCGGTGAGGCTCTTCACCGGCCACCGAGGCCCCGTGCT
CTCTCTGGCCTTCTCCCCCAATGGAAAGACTTGGCGTCGGCAGGCGAGGACCAGCGTCTG
AAGCTGTGGGACCTGGCATCTGGGACCCTCTTCAAAGAGCTGCGAGGCCATACAGACAAC
ATCACCAGCCTCACCTTTAGCCCTGACAGCAGCTTGATCGCGTCAGCGTCCATGGACAAT
TCAGTGCGTGTCTGGGACATCCGGAACACGCACTGCAGCGCGCCCACCGATGGCTCCTCC
AGCAAGCTGGTGGGCGTCTACACCGGCCAGATGAGCAACGTGCTGAGCGTGCAGTTCATG
GCCTGCAACCTCCTGCTGGTGACCGGAATCACACAAGAAAATCAGGAACATTGATTTTGT
AGCTGATGGAACGGACTGGGGCGA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|56204080|emb|CAI22015.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|56204080|emb|CAI22015.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               83-362, gnl|bosTau2|chr21 (6631476-6631198)
               

               
               83-362, gnl|Hg17|chr17 (30849345-30849623)
               

               
               83-362, gnl|Mm7|chr8 (122597004-122595337)
               


               
               471-1883, gnl|bosTau2|chr21 (6631198-6629785)
               

               
               471-1883, gnl|Hg17|chr1 (226045263-226036744)
               

               
               471-1883, gnl|Mm7|chr8 (122595337-122584418)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               83-362, gnl|bosTau2|chr21 (6631476-6631198)
               

               
               83-362, gnl|Hg17|chr17 (30849345-30849623)
               

               
               83-362, gnl|Mm7|chr8 (122597004-122595337)
               


               
               471-1883, gnl|bosTau2|chr21 (6631198-6629785)
               

               
               471-1883, gnl|Hg17|chr1 (226045263-226036744)
               

               
               471-1883, gnl|Mm7|chr8 (122595337-122584418)

	83-362, gnl\|bosTau2\|chr21 (6631476-6631198)
	83-362, gnl\|Hg17\|chr17 (30849345-30849623)
	83-362, gnl\|Mm7\|chr8 (122597004-122595337)

	471-1883, gnl\|bosTau2\|chr21 (6631198-6629785)
	471-1883, gnl\|Hg17\|chr1 (226045263-226036744)
	471-1883, gnl\|Mm7\|chr8 (122595337-122584418)