Non-Coding RNA Search

Ss1.1-Ova1-OVRM10203A11.5

Sequence:


               
               GCGGCCGCTGGACTTTGAGCAACGGCGGGTCCATGAACTGGTGGTGCAGGCGCGGGACGG
CGGGGCTCACCCTGAGCTGGGCTCGGCCTTCGTGACCGTGCACGTGCGCGATGCCAACGA
CAATCAGCCCTCCATGACCGTCATCTTCCTGAGCGCGGACGGCTCCCCCCGGGTGTCCGA
GGCTGCCCCCCCCGGCCAGCTTGTTGCCCGCATCTCTGTGTCGGACCCCGATGATGGTGA
CTTCGCCCACGTCAACGTGTCCCTGGAGGGTGGCGAGGGCCACTTCGCGCTCAGCACCCA
GGACAGCGTCATCTACCTGGTGTGCGTGGCTCGCCGGCTGGACCGGGAGGAACGGGATGC
CTATAACCTGCGAGTTACGGCCACAGACTCGGGCTCGCCCCCGCTGCGGGCCGAGGCTGC
CTTCGTGCTGCACGTCACCGATGTCAACGACAATGCCCCCACCTTTGACCGCCAGCTCTA
CCGGCCGGAGCCCCTGCCTGAGGTTGCACTGCCTGGCAGTTTCGTGGTGCGGGTGACGGC
CCAGGATCCTGACCAGGGCACCAACGGTCAGGTCACCTATAGCCTGGCCCCAGGTGCCCA
CGCCCACTGGTTCTCCATCGACCCCTCCTCGGGCATCATCACCACGGCTGCCTCGCTGGA
CTACGAGTTGGAACCTCAGCCACAGCTAATTGTGGTGGCCACGGACGGAGGCTTGCCCCC
TCTTGCCTCCTCTGCCACGGTGAGTGTGGCCTTGCAGGACGTGAACGACAACGAGCCGCA
GTTCCAGAGGACCTTCTACAACGCCTCCCTGCCCGAGGGCACCCAGCCCGGAACCTGCTT
CCTACAGGTAGGTAAGCCCCGCACACGGCAGGATGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGCCGCTGGACTTTGAGCAACGGCGGGTCCATGAACTGGTGGTGCAGGCGCGGGACGG
CGGGGCTCACCCTGAGCTGGGCTCGGCCTTCGTGACCGTGCACGTGCGCGATGCCAACGA
CAATCAGCCCTCCATGACCGTCATCTTCCTGAGCGCGGACGGCTCCCCCCGGGTGTCCGA
GGCTGCCCCCCCCGGCCAGCTTGTTGCCCGCATCTCTGTGTCGGACCCCGATGATGGTGA
CTTCGCCCACGTCAACGTGTCCCTGGAGGGTGGCGAGGGCCACTTCGCGCTCAGCACCCA
GGACAGCGTCATCTACCTGGTGTGCGTGGCTCGCCGGCTGGACCGGGAGGAACGGGATGC
CTATAACCTGCGAGTTACGGCCACAGACTCGGGCTCGCCCCCGCTGCGGGCCGAGGCTGC
CTTCGTGCTGCACGTCACCGATGTCAACGACAATGCCCCCACCTTTGACCGCCAGCTCTA
CCGGCCGGAGCCCCTGCCTGAGGTTGCACTGCCTGGCAGTTTCGTGGTGCGGGTGACGGC
CCAGGATCCTGACCAGGGCACCAACGGTCAGGTCACCTATAGCCTGGCCCCAGGTGCCCA
CGCCCACTGGTTCTCCATCGACCCCTCCTCGGGCATCATCACCACGGCTGCCTCGCTGGA
CTACGAGTTGGAACCTCAGCCACAGCTAATTGTGGTGGCCACGGACGGAGGCTTGCCCCC
TCTTGCCTCCTCTGCCACGGTGAGTGTGGCCTTGCAGGACGTGAACGACAACGAGCCGCA
GTTCCAGAGGACCTTCTACAACGCCTCCCTGCCCGAGGGCACCCAGCCCGGAACCTGCTT
CCTACAGGTAGGTAAGCCCCGCACACGGCAGGATGC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               361-640, - strand, RNAz p=0.946532

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               361-640, - strand, RNAz p=0.946532

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               511-632, - strand, RNAmicro p=0.994645

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               511-632, - strand, RNAmicro p=0.994645

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-863, gnl|bosTau2|chr15 (28937673-28936811)
               

               
               1-863, gnl|Hg17|chr11 (6618470-6617611)
               

               
               1-863, gnl|Mm7|chr7 (101828700-101827839)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-863, gnl|bosTau2|chr15 (28937673-28936811)
               

               
               1-863, gnl|Hg17|chr11 (6618470-6617611)
               

               
               1-863, gnl|Mm7|chr7 (101828700-101827839)

	1-863, gnl\|bosTau2\|chr15 (28937673-28936811)
	1-863, gnl\|Hg17\|chr11 (6618470-6617611)
	1-863, gnl\|Mm7\|chr7 (101828700-101827839)