Ss1.1-Ova1-OVRM10203F04.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GACAGATGATAGGGATATATCAGAGACAGTGAGTGAAACCTGGAGTACAGATGTCTTGGG AAGTGATTTTGACCCTAACGTCGATGAAGATCGCTTACAAGAAATTGCAGGTGCAGCAGC GGAGAATATGTTAGGCAGTTTACTCTGCCTGCCAGGTTCAGGGTCAGTGCTTCTTGACCC CTGCACTGGTTCTACCATATCAGAGACAACAAGCGAAGCTTGGAGTGTAGAGGTATTGCC AAGTGACTCAGAGGCCCCAGATCTAAAGCAGGAGGAACGTCTGCAAGAACTGGAGAGCTG TTCTGGACTGGGTAGCACATCTGATGATACGGATGTCAGGGAGGTCAGTTCCCGCCCCAG CACACCAGGCCTCAGTGTTGTGTCGGGTATAAGTGCAACCTCTGAGGATATTCCCAATAA AATTGAAGACCTGAGGTCTGAGTGCAGCTCTGATTTTGGGGGTAAAGACTCTGTCACTAG TCCAGACATGGATGAAATAGCTCATGGTGCCCACCAGCTGACCTCTCCTCCTTCTCAGTC AGAGTCTCTGCTGGCCATGTTTGATCCACTGTCTTCACATGAAGGGGCTTCCGCCGTGGT AAGGCCAAAGGTTCACTATGCCAGGCCATCGCATCCACCTCCCGACCCCCCAATCCTGGA AGGAGCTGTGGGAGGAAATGAGGCCAGGTTGCCAAACTTCAGTTCCCATGTTTTAACTCC AGCTGAGATGGAAGCATTCAAACAAAGGCATTCTTACCCTGAGAGATTAGTTCGCAGCAG AAGCTCTGATATAGTGTCTTCTGTCCGGCGACCTATGAGTGACCCCAGCTGGAACCGACG TCCAGGGAACGAAGAGCGAGAACTCCCTCCAGCCGCAGCCATTGGTGCTACTTCTTTGGT GGCTGCACCTCATTCGTCATCGTCGTCCCCGAGTAAGGACTCCTCAAGAGGAGAGACTGA AGAACGCAAAGATAGCGATGATGAGAAATCAGACAGGAACAGACCTTGGTGGAGAAAACG TTTTGTTTCTGCCATGCCTAAAGCTCCTATACCATT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GACAGATGATAGGGATATATCAGAGACAGTGAGTGAAACCTGGAGTACAGATGTCTTGGG AAGTGATTTTGACCCTAACGTCGATGAAGATCGCTTACAAGAAATTGCAGGTGCAGCAGC GGAGAATATGTTAGGCAGTTTACTCTGCCTGCCAGGTTCAGGGTCAGTGCTTCTTGACCC CTGCACTGGTTCTACCATATCAGAGACAACAAGCGAAGCTTGGAGTGTAGAGGTATTGCC AAGTGACTCAGAGGCCCCAGATCTAAAGCAGGAGGAACGTCTGCAAGAACTGGAGAGCTG TTCTGGACTGGGTAGCACATCTGATGATACGGATGTCAGGGAGGTCAGTTCCCGCCCCAG CACACCAGGCCTCAGTGTTGTGTCGGGTATAAGTGCAACCTCTGAGGATATTCCCAATAA AATTGAAGACCTGAGGTCTGAGTGCAGCTCTGATTTTGGGGGTAAAGACTCTGTCACTAG TCCAGACATGGATGAAATAGCTCATGGTGCCCACCAGCTGACCTCTCCTCCTTCTCAGTC AGAGTCTCTGCTGGCCATGTTTGATCCACTGTCTTCACATGAAGGGGCTTCCGCCGTGGT AAGGCCAAAGGTTCACTATGCCAGGCCATCGCATCCACCTCCCGACCCCCCAATCCTGGA AGGAGCTGTGGGAGGAAATGAGGCCAGGTTGCCAAACTTCAGTTCCCATGTTTTAACTCC AGCTGAGATGGAAGCATTCAAACAAAGGCATTCTTACCCTGAGAGATTAGTTCGCAGCAG AAGCTCTGATATAGTGTCTTCTGTCCGGCGACCTATGAGTGACCCCAGCTGGAACCGACG TCCAGGGAACGAAGAGCGAGAACTCCCTCCAGCCGCAGCCATTGGTGCTACTTCTTTGGT GGCTGCACCTCATTCGTCATCGTCGTCCCCGAGTAAGGACTCCTCAAGAGGAGAGACTGA AGAACGCAAAGATAGCGATGATGAGAAATCAGACAGGAACAGACCTTGGTGGAGAAAACG TTTTGTTTCTGCCATGCCTAAAGCTCCTATACCATT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 106-251, + strand, RNAz p=0.965612 | |
| 106-198, + strand, RNAz p=0.884465 | |
| 823-955, - strand, RNAz p=0.87492 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 106-251, + strand, RNAz p=0.965612 | |
| 106-198, + strand, RNAz p=0.884465 | |
| 823-955, - strand, RNAz p=0.87492 |
| Aligned organism(s): 39 entry(ies) | More info |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
| 106-251, gnl|bosTau2|chr11 (76836607-76836752) | |
| 106-251, gnl|canFam2|chr9 (61122597-61122417) | |
| 106-251, gnl|danRer3|chr8 (32019164-32019321) | |
| 106-251, gnl|echTel1|scaffold_251024 (398-578) | |
| 106-251, gnl|fr1|chrUn (48381622-48381450) | |
| 106-251, gnl|galGal2|chr17 (837141-836920) | |
| 106-251, gnl|hg17|chr9 (125171882-125172062) | |
| 106-251, gnl|Hg17|chr9 (125171906-125172051) | |
| 106-251, gnl|loxAfr1|scaffold_6658 (23656-23836) | |
| 106-251, gnl|mm7|chr2 (34716591-34716414) | |
| 106-251, gnl|Mm7|chr2 (34716566-34716423) | |
| 106-251, gnl|monDom2|scaffold_38 (19495492-19495672) | |
| 106-251, gnl|oryCun1|scaffold_141642 (274-94) | |
| 106-251, gnl|panTro1|chr11 (109972458-109972638) | |
| 106-251, gnl|rheMac2|chr15 (101301602-101301422) | |
| 106-251, gnl|rn3|chr3 (13619856-13619678) | |
| 106-251, gnl|tetNig1|chrUn_random (34234814-34234667) | |
| 106-251, gnl|xenTro1|scaffold_1694 (83254-83430) | |
| 386-508, gnl|bosTau2|chr11 (76838718-76838840) | |
| 386-508, gnl|canFam2|chr9 (61120555-61120360) | |
| 386-508, gnl|danRer3|chr8 (32024128-32024282) | |
| 386-508, gnl|dasNov1|scaffold_5577 (7659-7849) | |
| 386-508, gnl|fr1|chrUn (48379779-48379612) | |
| 386-508, gnl|galGal2|chr17 (835759-835549) | |
| 386-508, gnl|hg17|chr9 (125174301-125174489) | |
| 386-508, gnl|Hg17|chr9 (125174342-125174464) | |
| 386-508, gnl|loxAfr1|scaffold_6658 (25452-25639) | |
| 386-508, gnl|mm7|chr2 (34713508-34713306) | |
| 386-508, gnl|Mm7|chr2 (34713451-34713329) | |
| 386-508, gnl|monDom2|scaffold_38 (19498837-19498997) | |
| 386-508, gnl|oryCun1|scaffold_176576 (288-76) | |
| 386-508, gnl|panTro1|chr11 (109974875-109975063) | |
| 386-508, gnl|rheMac2|chr15 (101299168-101298980) | |
| 386-508, gnl|rn3|chr3 (13616969-13616773) | |
| 386-508, gnl|tetNig1|chrUn_random (34233054-34232895) | |
| 386-508, gnl|xenTro1|scaffold_1694 (83739-83909) | |
| 544-955, gnl|bosTau2|chr11 (76842881-76843287) | |
| 544-955, gnl|Hg17|chr9 (125179019-125179424) | |
| 544-955, gnl|Mm7|chr2 (34711871-34711477) |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 106-251, gnl|bosTau2|chr11 (76836607-76836752) | |
| 106-251, gnl|canFam2|chr9 (61122597-61122417) | |
| 106-251, gnl|danRer3|chr8 (32019164-32019321) | |
| 106-251, gnl|echTel1|scaffold_251024 (398-578) | |
| 106-251, gnl|fr1|chrUn (48381622-48381450) | |
| 106-251, gnl|galGal2|chr17 (837141-836920) | |
| 106-251, gnl|hg17|chr9 (125171882-125172062) | |
| 106-251, gnl|Hg17|chr9 (125171906-125172051) | |
| 106-251, gnl|loxAfr1|scaffold_6658 (23656-23836) | |
| 106-251, gnl|mm7|chr2 (34716591-34716414) | |
| 106-251, gnl|Mm7|chr2 (34716566-34716423) | |
| 106-251, gnl|monDom2|scaffold_38 (19495492-19495672) | |
| 106-251, gnl|oryCun1|scaffold_141642 (274-94) | |
| 106-251, gnl|panTro1|chr11 (109972458-109972638) | |
| 106-251, gnl|rheMac2|chr15 (101301602-101301422) | |
| 106-251, gnl|rn3|chr3 (13619856-13619678) | |
| 106-251, gnl|tetNig1|chrUn_random (34234814-34234667) | |
| 106-251, gnl|xenTro1|scaffold_1694 (83254-83430) | |
| 386-508, gnl|bosTau2|chr11 (76838718-76838840) | |
| 386-508, gnl|canFam2|chr9 (61120555-61120360) | |
| 386-508, gnl|danRer3|chr8 (32024128-32024282) | |
| 386-508, gnl|dasNov1|scaffold_5577 (7659-7849) | |
| 386-508, gnl|fr1|chrUn (48379779-48379612) | |
| 386-508, gnl|galGal2|chr17 (835759-835549) | |
| 386-508, gnl|hg17|chr9 (125174301-125174489) | |
| 386-508, gnl|Hg17|chr9 (125174342-125174464) | |
| 386-508, gnl|loxAfr1|scaffold_6658 (25452-25639) | |
| 386-508, gnl|mm7|chr2 (34713508-34713306) | |
| 386-508, gnl|Mm7|chr2 (34713451-34713329) | |
| 386-508, gnl|monDom2|scaffold_38 (19498837-19498997) | |
| 386-508, gnl|oryCun1|scaffold_176576 (288-76) | |
| 386-508, gnl|panTro1|chr11 (109974875-109975063) | |
| 386-508, gnl|rheMac2|chr15 (101299168-101298980) | |
| 386-508, gnl|rn3|chr3 (13616969-13616773) | |
| 386-508, gnl|tetNig1|chrUn_random (34233054-34232895) | |
| 386-508, gnl|xenTro1|scaffold_1694 (83739-83909) | |
| 544-955, gnl|bosTau2|chr11 (76842881-76843287) | |
| 544-955, gnl|Hg17|chr9 (125179019-125179424) | |
| 544-955, gnl|Mm7|chr2 (34711871-34711477) |