Non-Coding RNA Search

Ss1.1-Ova1-OVRM10204C06.5

Sequence:


               
               ATGTGCGCGGCCCGGCAATTTGCCCCGGTAGTAAAGGGTTGGGGGTCTTAGAGTTTTCGA
CTGATCTCCTTCTGAGTGTGAATTCCTCTGTGGGACGGAAACAGGGAGCGTGGTGGGGAG
AGAGTTGATGTCGACCAGAGCCTCCAGCTTCTCCTCCGCTTTCTGGGAAACTTGCAGACC
TGCCCGGGGGGAAGCTGCGTGTTAGCAAGATCTGGAAGCTGCAGACCCCCGTCAGGGCTC
CTCCGAGACACGGGTTGTCTGGGGCTGGCGGCCTCCCCGGGCAGGACTTGGGGAGCTCAG
CGACAGCTGATTCCAGAACCACCTCTCCGCAGAAAAAGAACCACTTTACTTTCCATTCTG
CAGCCCGAGACAACCACATCCTCCTCACACACAGCCCAGGCTCCCATGGAGAGCTCAGAC
GTGGAGCTGGATCTGCAGCGGAGCGTACAGGCTGTGCTCAGGGAGCTCCAGAGTGGGGAG
GGCCCCTCTGGCAGGTGGCAATGCCCCCCCCGGGCTGGCAGGACCACTTCCACCCAGCCA
GGCTGGGAGACCCCAACTCAGCTGCCCAAATGGGAGAATATCTTGAAAAACAGGCATCCA
TAGGCTGATAGGAGCCTCAGCTGCTGGCTGGTCACTGAGCTGGACATTGGAAACCATGAC
AGCAAGAGCCAAAATTTATTGCCAAACACTTGTATTTGTTTAATAGAAACTTCTGTGGCC
CTTATAATATATCAAGTAGTGGGAAAAAGCTGTAGACAATTATTAACTTGTTTAGTCTTC
ATAAAGCCCCATCAGATAGAGTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGTGCGCGGCCCGGCAATTTGCCCCGGTAGTAAAGGGTTGGGGGTCTTAGAGTTTTCGA
CTGATCTCCTTCTGAGTGTGAATTCCTCTGTGGGACGGAAACAGGGAGCGTGGTGGGGAG
AGAGTTGATGTCGACCAGAGCCTCCAGCTTCTCCTCCGCTTTCTGGGAAACTTGCAGACC
TGCCCGGGGGGAAGCTGCGTGTTAGCAAGATCTGGAAGCTGCAGACCCCCGTCAGGGCTC
CTCCGAGACACGGGTTGTCTGGGGCTGGCGGCCTCCCCGGGCAGGACTTGGGGAGCTCAG
CGACAGCTGATTCCAGAACCACCTCTCCGCAGAAAAAGAACCACTTTACTTTCCATTCTG
CAGCCCGAGACAACCACATCCTCCTCACACACAGCCCAGGCTCCCATGGAGAGCTCAGAC
GTGGAGCTGGATCTGCAGCGGAGCGTACAGGCTGTGCTCAGGGAGCTCCAGAGTGGGGAG
GGCCCCTCTGGCAGGTGGCAATGCCCCCCCCGGGCTGGCAGGACCACTTCCACCCAGCCA
GGCTGGGAGACCCCAACTCAGCTGCCCAAATGGGAGAATATCTTGAAAAACAGGCATCCA
TAGGCTGATAGGAGCCTCAGCTGCTGGCTGGTCACTGAGCTGGACATTGGAAACCATGAC
AGCAAGAGCCAAAATTTATTGCCAAACACTTGTATTTGTTTAATAGAAACTTCTGTGGCC
CTTATAATATATCAAGTAGTGGGAAAAAGCTGTAGACAATTATTAACTTGTTTAGTCTTC
ATAAAGCCCCATCAGATAGAGTGT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               428-582, + strand, RNAz p=0.866042

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               428-582, + strand, RNAz p=0.866042

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               311-775, gnl|bosTau2|chr19 (21142394-21141951)
               

               
               311-775, gnl|Hg17|chr17 (8693933-8693474)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               311-775, gnl|bosTau2|chr19 (21142394-21141951)
               

               
               311-775, gnl|Hg17|chr17 (8693933-8693474)

	311-775, gnl\|bosTau2\|chr19 (21142394-21141951)
	311-775, gnl\|Hg17\|chr17 (8693933-8693474)