Non-Coding RNA Search

Ss1.1-Ova1-OVRM10205G03.5

Sequence:


               
               GCTGCGGCCGCGGGCGGGCGGTGAAGCTGGGTGAGCGCGTAGTTGGCGCCCCGGCTCGGC
GCCCACGGCTCTCCGCACCCCGGGCTTGCTACCGCGCGGGGGCCTGCGCCGCCCCTGCCT
CCGCTTCTGGGCCATGGTGCAACCCGAGGGCGCGTCCGACCCCCGTCGCCGCTGACCCCG
GTCCAGCACTCCATGGCCGCCTCGGCGCCGCCCCCACCGGACAAGCTGGAGGGTGGTGGC
GGCCCCGCACCGCCCCCTGCGCCGCCCAGCACCGGGAGGAAGCAGGGCAAGGCCGGTCTG
CAGATGAAGAGCCCAGAAAAGAAGCGAAGGAAGTCAAATACTCAGGGTCCTGCATACTCA
CATCTGACGGAGTTTGCACCACCCCCGACTCCCATGGTGGATCACCTGGTTGCATCCAAC
CCTTTCGAGGATGACTTCGGAGCCCCTAAGGTGGGGGGCGCAGCCCCTCCATTTCTTGGC
AGTCCTATTCCCTTTGGGGGCTTTCGCGTACAGGGGGGCATGGCAGGCCAGGTACCCCCA
GGCTACGGCACTGCCGGTGGAGGGGGTCCCCAGCCTCTTCGTCGACAGCCTCCCCCTTTC
CCTCCCAACCCCATGGGTCCTGCTTTCAACATGCCCCCCCAGGGACCTGGCTACCCACCC
CCAGGCAACATGAACTTTCCCAGCCAACCCTTCAACCAGCCTCTGGGTCAGAACTTTAGC
CCACCGGGTGGGCAGATGATGCCAGGCCCGGTGGGGGGATTTGGCCCCATGATCTCACCC
ACCATGGGACAACCTCCCAGAGGGGAGCTGGGCCCCCCTTCTCTCCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTGCGGCCGCGGGCGGGCGGTGAAGCTGGGTGAGCGCGTAGTTGGCGCCCCGGCTCGGC
GCCCACGGCTCTCCGCACCCCGGGCTTGCTACCGCGCGGGGGCCTGCGCCGCCCCTGCCT
CCGCTTCTGGGCCATGGTGCAACCCGAGGGCGCGTCCGACCCCCGTCGCCGCTGACCCCG
GTCCAGCACTCCATGGCCGCCTCGGCGCCGCCCCCACCGGACAAGCTGGAGGGTGGTGGC
GGCCCCGCACCGCCCCCTGCGCCGCCCAGCACCGGGAGGAAGCAGGGCAAGGCCGGTCTG
CAGATGAAGAGCCCAGAAAAGAAGCGAAGGAAGTCAAATACTCAGGGTCCTGCATACTCA
CATCTGACGGAGTTTGCACCACCCCCGACTCCCATGGTGGATCACCTGGTTGCATCCAAC
CCTTTCGAGGATGACTTCGGAGCCCCTAAGGTGGGGGGCGCAGCCCCTCCATTTCTTGGC
AGTCCTATTCCCTTTGGGGGCTTTCGCGTACAGGGGGGCATGGCAGGCCAGGTACCCCCA
GGCTACGGCACTGCCGGTGGAGGGGGTCCCCAGCCTCTTCGTCGACAGCCTCCCCCTTTC
CCTCCCAACCCCATGGGTCCTGCTTTCAACATGCCCCCCCAGGGACCTGGCTACCCACCC
CCAGGCAACATGAACTTTCCCAGCCAACCCTTCAACCAGCCTCTGGGTCAGAACTTTAGC
CCACCGGGTGGGCAGATGATGCCAGGCCCGGTGGGGGGATTTGGCCCCATGATCTCACCC
ACCATGGGACAACCTCCCAGAGGGGAGCTGGGCCCCCCTTCTCTCCCC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q80V76_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q80V76_MOUSE

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               382-661, - strand, RNAz p=0.859675
               

               
               702-828, - strand, RNAz p=0.991847

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               382-661, - strand, RNAz p=0.859675
               

               
               702-828, - strand, RNAz p=0.991847

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-297, gnl|bosTau2|chr3 (9048927-9048631)
               

               
               1-297, gnl|Hg17|chr1 (151747321-151747021)
               

               
               1-297, gnl|Mm7|chr3 (89557099-89557396)
               


               
               343-828, gnl|bosTau2|chr3 (9047494-9047009)
               

               
               343-828, gnl|Hg17|chr1 (151745398-151744913)
               

               
               343-828, gnl|Mm7|chr3 (89559112-89559597)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-297, gnl|bosTau2|chr3 (9048927-9048631)
               

               
               1-297, gnl|Hg17|chr1 (151747321-151747021)
               

               
               1-297, gnl|Mm7|chr3 (89557099-89557396)
               


               
               343-828, gnl|bosTau2|chr3 (9047494-9047009)
               

               
               343-828, gnl|Hg17|chr1 (151745398-151744913)
               

               
               343-828, gnl|Mm7|chr3 (89559112-89559597)

	382-661, - strand, RNAz p=0.859675
	702-828, - strand, RNAz p=0.991847

	1-297, gnl\|bosTau2\|chr3 (9048927-9048631)
	1-297, gnl\|Hg17\|chr1 (151747321-151747021)
	1-297, gnl\|Mm7\|chr3 (89557099-89557396)

	343-828, gnl\|bosTau2\|chr3 (9047494-9047009)
	343-828, gnl\|Hg17\|chr1 (151745398-151744913)
	343-828, gnl\|Mm7\|chr3 (89559112-89559597)