Non-Coding RNA Search

Ss1.1-Ova1-OVRM10206D09.5

Sequence:


               
               AAGGTAAGGGGGAGCGAGAGCGCTGGAGAGAGAAGATCGGGGGGCTGAAATCCATCTTCA
TCCTACCGCTCCGCCTGTGTTGGTGGAATGAGCGTTGCATGTGTCTTGAAGAGAAAAGCA
GTGCTTTGGCAGGACTCTTTCAGCCCCCACCTGAAACATCACCCTCAAGAACCAGCTAAT
CCCAACATGCCTGTTGTTTTGACATCTGGAACAGGGTCGCAAGCGCAGCCACAACCAGCT
GCAAATCAGGCTCTTGCAGCTGGGACACACTCCAGCCCTGTCCCAGGATCCATAGGAGTT
GCAGGCCGTTCCCAGGACGACGCTATGGTGGACTACTTCTTTCAGAGGCAGCATGGTGAG
CAGCTTGGGGGAGGAGGAAGTGGTGGAGGCGGCTATAATAATAGCAAACATCGATGGCCT
ACTGGGGATAACATTCATGCAGAACATCAGGTACGTTCTATGGATGAACTGAATCATGAT
TTTCAAGCACTTGCTCTGGAGGGAAGAGCGATGGGAGAGCAGCTCTTGCCAGGTAAAAAG
TTTTGGGAAACAGATGAATCCAGCAAAGATGGACCAAAAGGAATATTCCTGGGTGATCAA
TGGCGAGACAGTGCCTGGGGAACATCAGATCATTCAGTTTCCCAGCCAATCATGGTGCAG
AGAAGACCTGGTCAGAGTTTCCATGTGAACAGTGAGGTCAATTCTGTACTGTCCCCACGG
TCGGAGAGTGGGGGACTAGGCGTTAGCATGGTGGAGTGTGTGTTGAGCTCATCCCCGGGC
GATTCCTGTCTAAGAAAGGAGGATTTGGCCCAGGGATGCAGACAGTGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGGTAAGGGGGAGCGAGAGCGCTGGAGAGAGAAGATCGGGGGGCTGAAATCCATCTTCA
TCCTACCGCTCCGCCTGTGTTGGTGGAATGAGCGTTGCATGTGTCTTGAAGAGAAAAGCA
GTGCTTTGGCAGGACTCTTTCAGCCCCCACCTGAAACATCACCCTCAAGAACCAGCTAAT
CCCAACATGCCTGTTGTTTTGACATCTGGAACAGGGTCGCAAGCGCAGCCACAACCAGCT
GCAAATCAGGCTCTTGCAGCTGGGACACACTCCAGCCCTGTCCCAGGATCCATAGGAGTT
GCAGGCCGTTCCCAGGACGACGCTATGGTGGACTACTTCTTTCAGAGGCAGCATGGTGAG
CAGCTTGGGGGAGGAGGAAGTGGTGGAGGCGGCTATAATAATAGCAAACATCGATGGCCT
ACTGGGGATAACATTCATGCAGAACATCAGGTACGTTCTATGGATGAACTGAATCATGAT
TTTCAAGCACTTGCTCTGGAGGGAAGAGCGATGGGAGAGCAGCTCTTGCCAGGTAAAAAG
TTTTGGGAAACAGATGAATCCAGCAAAGATGGACCAAAAGGAATATTCCTGGGTGATCAA
TGGCGAGACAGTGCCTGGGGAACATCAGATCATTCAGTTTCCCAGCCAATCATGGTGCAG
AGAAGACCTGGTCAGAGTTTCCATGTGAACAGTGAGGTCAATTCTGTACTGTCCCCACGG
TCGGAGAGTGGGGGACTAGGCGTTAGCATGGTGGAGTGTGTGTTGAGCTCATCCCCGGGC
GATTCCTGTCTAAGAAAGGAGGATTTGGCCCAGGGATGCAGACAGTGA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|26342390|dbj|BAC34857.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|26342390|dbj|BAC34857.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               626-744, + strand, RNAz p=0.537342

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               626-744, + strand, RNAz p=0.537342

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               626-783, gnl|bosTau2|chr11 (61415158-61415001)
               

               
               626-783, gnl|canFam2|chr17 (18301802-18302009)
               

               
               626-783, gnl|danRer3|chr23 (36923503-36923706)
               

               
               626-783, gnl|dasNov1|scaffold_31774 (4695-4884)
               

               
               626-783, gnl|echTel1|scaffold_184995 (5878-6085)
               

               
               626-783, gnl|fr1|chrUn (80876231-80876441)
               

               
               626-783, gnl|galGal2|chr3 (99851186-99851401)
               

               
               626-783, gnl|hg17|chr2 (20433606-20433813)
               

               
               626-783, gnl|Hg17|chr2 (20433815-20433658)
               

               
               626-783, gnl|loxAfr1|scaffold_1458 (98532-98739)
               

               
               626-783, gnl|mm7|chr12 (8735758-8735551)
               

               
               626-783, gnl|Mm7|chr12 (8735547-8735704)
               

               
               626-783, gnl|monDom2|scaffold_164 (677133-676933)
               

               
               626-783, gnl|oryCun1|scaffold_203891 (3604-3811)
               

               
               626-783, gnl|panTro1|chr12 (21260011-21260218)
               

               
               626-783, gnl|rheMac2|chr13 (20217430-20217637)
               

               
               626-783, gnl|rn3|chr6 (32190600-32190390)
               

               
               626-783, gnl|tetNig1|chr14 (4061020-4060825)
               

               
               626-783, gnl|xenTro1|scaffold_103 (1677283-1677498)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               626-783, gnl|bosTau2|chr11 (61415158-61415001)
               

               
               626-783, gnl|canFam2|chr17 (18301802-18302009)
               

               
               626-783, gnl|danRer3|chr23 (36923503-36923706)
               

               
               626-783, gnl|dasNov1|scaffold_31774 (4695-4884)
               

               
               626-783, gnl|echTel1|scaffold_184995 (5878-6085)
               

               
               626-783, gnl|fr1|chrUn (80876231-80876441)
               

               
               626-783, gnl|galGal2|chr3 (99851186-99851401)
               

               
               626-783, gnl|hg17|chr2 (20433606-20433813)
               

               
               626-783, gnl|Hg17|chr2 (20433815-20433658)
               

               
               626-783, gnl|loxAfr1|scaffold_1458 (98532-98739)
               

               
               626-783, gnl|mm7|chr12 (8735758-8735551)
               

               
               626-783, gnl|Mm7|chr12 (8735547-8735704)
               

               
               626-783, gnl|monDom2|scaffold_164 (677133-676933)
               

               
               626-783, gnl|oryCun1|scaffold_203891 (3604-3811)
               

               
               626-783, gnl|panTro1|chr12 (21260011-21260218)
               

               
               626-783, gnl|rheMac2|chr13 (20217430-20217637)
               

               
               626-783, gnl|rn3|chr6 (32190600-32190390)
               

               
               626-783, gnl|tetNig1|chr14 (4061020-4060825)
               

               
               626-783, gnl|xenTro1|scaffold_103 (1677283-1677498)

	626-783, gnl\|bosTau2\|chr11 (61415158-61415001)
	626-783, gnl\|canFam2\|chr17 (18301802-18302009)
	626-783, gnl\|danRer3\|chr23 (36923503-36923706)
	626-783, gnl\|dasNov1\|scaffold_31774 (4695-4884)
	626-783, gnl\|echTel1\|scaffold_184995 (5878-6085)
	626-783, gnl\|fr1\|chrUn (80876231-80876441)
	626-783, gnl\|galGal2\|chr3 (99851186-99851401)
	626-783, gnl\|hg17\|chr2 (20433606-20433813)
	626-783, gnl\|Hg17\|chr2 (20433815-20433658)
	626-783, gnl\|loxAfr1\|scaffold_1458 (98532-98739)
	626-783, gnl\|mm7\|chr12 (8735758-8735551)
	626-783, gnl\|Mm7\|chr12 (8735547-8735704)
	626-783, gnl\|monDom2\|scaffold_164 (677133-676933)
	626-783, gnl\|oryCun1\|scaffold_203891 (3604-3811)
	626-783, gnl\|panTro1\|chr12 (21260011-21260218)
	626-783, gnl\|rheMac2\|chr13 (20217430-20217637)
	626-783, gnl\|rn3\|chr6 (32190600-32190390)
	626-783, gnl\|tetNig1\|chr14 (4061020-4060825)
	626-783, gnl\|xenTro1\|scaffold_103 (1677283-1677498)