Non-Coding RNA Search

Ss1.1-Ova1-OVRM10208B06.5

Sequence:


               
               TCTTTTGCTCTTCCTCTTCACAGGGCTGGCTGGAGACAGCCCAGCCTGCTGGCCTCAAAT
CTCTCTCTCTAATGCTCTAGTCACTGGGTGAGTCAGCCCGACTTGGGTAGGAGTTGGGTG
ACAGCTGGCTCACCCTCCCCACTCACAGGCACCAGGTCTGGGAAAACCGGAGGAAGAGCT
TCTGGGACTACCAAAAAGTGAAAGGCGGCGCTTGGGTGTTGTGGGCGTCGGGGGGCTCAC
CACGGGGTCACCCGCCCCCCCTTTAAAGGGAAGAGATCCTCTTTGAGGCTGGATTTGGGG
TAGGGGGCAGAGGCAGCATTGAAATGAGAACAAGGGCTCTTTATCATCAGCTGGTCACCC
CTGTCCCTTCTTTCCAGATTTCCAAACACCTGGGCCTCCGAAGTGCCTATCAGCTTAGGC
TAGACCATCCAACACTGCTTCCCCCTTTTCAAACCCAAATCAAGTAGCCCCACTCTTCCA
GCCTCCAGAGCTGCAGCCGCCCAGGTTGGGGCTGGGAAGCGAGCTGCCAAGGAAAATACG
AAGCACCAGCTCGCAGGCGGCTCTCTGCTCTACCCAGGAGCGCACACACCCTGCATTCAC
CAGCGTGGCGGTAAAAGAGGGAAAGGCGAGAGGGAAAACACACCACCTTCCTTCGGGAGG
GAGGAATGTGGGAAACGGGTGAGTCGGCTAAGTTTCGAAGCAGGGCTGAACAGCCAGCTA
CAGAGCCCAAAGGAGCTGGTCAGCTCCGGACCTGCCAAAAAAGACTGGCTGGTGCCCCGG
GAAATGTACAAGGTGAAACTGACTAGCTCAGCACTCGCGGGTGGCGCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTTTTGCTCTTCCTCTTCACAGGGCTGGCTGGAGACAGCCCAGCCTGCTGGCCTCAAAT
CTCTCTCTCTAATGCTCTAGTCACTGGGTGAGTCAGCCCGACTTGGGTAGGAGTTGGGTG
ACAGCTGGCTCACCCTCCCCACTCACAGGCACCAGGTCTGGGAAAACCGGAGGAAGAGCT
TCTGGGACTACCAAAAAGTGAAAGGCGGCGCTTGGGTGTTGTGGGCGTCGGGGGGCTCAC
CACGGGGTCACCCGCCCCCCCTTTAAAGGGAAGAGATCCTCTTTGAGGCTGGATTTGGGG
TAGGGGGCAGAGGCAGCATTGAAATGAGAACAAGGGCTCTTTATCATCAGCTGGTCACCC
CTGTCCCTTCTTTCCAGATTTCCAAACACCTGGGCCTCCGAAGTGCCTATCAGCTTAGGC
TAGACCATCCAACACTGCTTCCCCCTTTTCAAACCCAAATCAAGTAGCCCCACTCTTCCA
GCCTCCAGAGCTGCAGCCGCCCAGGTTGGGGCTGGGAAGCGAGCTGCCAAGGAAAATACG
AAGCACCAGCTCGCAGGCGGCTCTCTGCTCTACCCAGGAGCGCACACACCCTGCATTCAC
CAGCGTGGCGGTAAAAGAGGGAAAGGCGAGAGGGAAAACACACCACCTTCCTTCGGGAGG
GAGGAATGTGGGAAACGGGTGAGTCGGCTAAGTTTCGAAGCAGGGCTGAACAGCCAGCTA
CAGAGCCCAAAGGAGCTGGTCAGCTCCGGACCTGCCAAAAAAGACTGGCTGGTGCCCCGG
GAAATGTACAAGGTGAAACTGACTAGCTCAGCACTCGCGGGTGGCGCA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               534-642, - strand, RNAz p=0.766569

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               534-642, - strand, RNAz p=0.766569

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-828, gnl|bosTau2|chr16 (40739361-40740196)
               

               
               3-828, gnl|Hg17|chr1 (12610502-12611307)
               

               
               3-828, gnl|Mm7|chr4 (144307105-144306305)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-828, gnl|bosTau2|chr16 (40739361-40740196)
               

               
               3-828, gnl|Hg17|chr1 (12610502-12611307)
               

               
               3-828, gnl|Mm7|chr4 (144307105-144306305)

	3-828, gnl\|bosTau2\|chr16 (40739361-40740196)
	3-828, gnl\|Hg17\|chr1 (12610502-12611307)
	3-828, gnl\|Mm7\|chr4 (144307105-144306305)