Non-Coding RNA Search

Ss1.1-Ova1-OVRM10211E07.5

Sequence:


               
               GTCCGGCAATGCGCACATGTCATCTTGGGCCTACTGAAGAACGCCCAGCCCTCTGTGCGA
CGCTTGAGCGTAGGGACATTCGAGGAGAGCGTCGGGGCCGGAATGGTACAAAGTCCTCAT
CGTTGGGGTCATCTACCATGGCATCAGAATCCTCATCTGACACTGGAATGCTCTCAGTGG
AATCCACAACCTCAGGTTTTGGAGGCTCTACTCTTCTAACGCGCTCACTTCTCTTCTGTA
CCCTCTCAGGCGGCTTCTCACTCGCCTTCCCAGTCAGGCCATCTCCTGGCAAGGAAGGGT
GTGCAGGGGGGCTAGGGCCCCCAGGTTTGGTCTGAGCACTGTTGATTCCATCCCCCAGAG
TCTCTCCCACTGAAGGGCTGGGGGGGCCATTTGGGCTCTGTGGCTGCCCTTGAGGAAGCT
CCTCCTCCTGCTCAGGGGAGCCCCTTCTCCCAGTAGCTATGGAGGTGGTCTCCTCCTCTT
CAATATGTGGGGACTGCAGGGTTATTGGAGAATCTGGAGCCAAAGGTTCTAGTAGCCCCT
CAGGTGAAGAGGGGTTTGCCCCAGCCCCTGCGTCAGGTGGCACCACCTCAGGGGTCTGGC
CCCCTGGTCCAGGCTCTAGGGTCTGATCTCCTGCATCCCATGCAAGGGTCCCCTCCGGAC
CATGGTCCACCTCTGGGGGGGAGGGAGCTTTATAGAGCAGCCCCCCCAGCCCCAGCAGCT
CAGTGGCTCCATCCAGGACTCCAGGGTCTTTTTCCAGGCCAGCAGGGGTATCAAGCAGGT
CCAGGGCTCCTGAGGATGGAGAAGGGCCAGGGGGCGCCCATCCTCGAGTTGGGGCAGTCT
GGGATTCCAGTAGATCCTCTCCAAATTCCATGTCTACTGGAAGGTCTCCAGCCAGGGGCT
TCTCTGGCAGGGTCAACGGGTCAAACGGACTGGGGAAATCACTGGGGTCCATGAGGATGA
CTGGATATGGGCTGCGGCAGGGTTAGTGTAACCGCTACAAGCCTAGAACTGCAGACAGCG
ACGGCCCCGCGCTCCTTCTCCACCTCCCTCCCTAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCCGGCAATGCGCACATGTCATCTTGGGCCTACTGAAGAACGCCCAGCCCTCTGTGCGA
CGCTTGAGCGTAGGGACATTCGAGGAGAGCGTCGGGGCCGGAATGGTACAAAGTCCTCAT
CGTTGGGGTCATCTACCATGGCATCAGAATCCTCATCTGACACTGGAATGCTCTCAGTGG
AATCCACAACCTCAGGTTTTGGAGGCTCTACTCTTCTAACGCGCTCACTTCTCTTCTGTA
CCCTCTCAGGCGGCTTCTCACTCGCCTTCCCAGTCAGGCCATCTCCTGGCAAGGAAGGGT
GTGCAGGGGGGCTAGGGCCCCCAGGTTTGGTCTGAGCACTGTTGATTCCATCCCCCAGAG
TCTCTCCCACTGAAGGGCTGGGGGGGCCATTTGGGCTCTGTGGCTGCCCTTGAGGAAGCT
CCTCCTCCTGCTCAGGGGAGCCCCTTCTCCCAGTAGCTATGGAGGTGGTCTCCTCCTCTT
CAATATGTGGGGACTGCAGGGTTATTGGAGAATCTGGAGCCAAAGGTTCTAGTAGCCCCT
CAGGTGAAGAGGGGTTTGCCCCAGCCCCTGCGTCAGGTGGCACCACCTCAGGGGTCTGGC
CCCCTGGTCCAGGCTCTAGGGTCTGATCTCCTGCATCCCATGCAAGGGTCCCCTCCGGAC
CATGGTCCACCTCTGGGGGGGAGGGAGCTTTATAGAGCAGCCCCCCCAGCCCCAGCAGCT
CAGTGGCTCCATCCAGGACTCCAGGGTCTTTTTCCAGGCCAGCAGGGGTATCAAGCAGGT
CCAGGGCTCCTGAGGATGGAGAAGGGCCAGGGGGCGCCCATCCTCGAGTTGGGGCAGTCT
GGGATTCCAGTAGATCCTCTCCAAATTCCATGTCTACTGGAAGGTCTCCAGCCAGGGGCT
TCTCTGGCAGGGTCAACGGGTCAAACGGACTGGGGAAATCACTGGGGTCCATGAGGATGA
CTGGATATGGGCTGCGGCAGGGTTAGTGTAACCGCTACAAGCCTAGAACTGCAGACAGCG
ACGGCCCCGCGCTCCTTCTCCACCTCCCTCCCTAGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|15278179|gb|AAH13009.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|15278179|gb|AAH13009.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               352-748, - strand, RNAz p=0.99422

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               352-748, - strand, RNAz p=0.99422

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-168, gnl|bosTau2|chrX (22026533-22026701)
               

               
               1-168, gnl|Hg17|chrX (70253429-70253597)
               

               
               1-168, gnl|Mm7|chrX (96743648-96743816)
               


               
               274-974, gnl|bosTau2|chrX (22067600-22068301)
               

               
               274-974, gnl|Hg17|chrX (70255447-70256148)
               

               
               274-974, gnl|Mm7|chrX (96745615-96746310)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-168, gnl|bosTau2|chrX (22026533-22026701)
               

               
               1-168, gnl|Hg17|chrX (70253429-70253597)
               

               
               1-168, gnl|Mm7|chrX (96743648-96743816)
               


               
               274-974, gnl|bosTau2|chrX (22067600-22068301)
               

               
               274-974, gnl|Hg17|chrX (70255447-70256148)
               

               
               274-974, gnl|Mm7|chrX (96745615-96746310)

	1-168, gnl\|bosTau2\|chrX (22026533-22026701)
	1-168, gnl\|Hg17\|chrX (70253429-70253597)
	1-168, gnl\|Mm7\|chrX (96743648-96743816)

	274-974, gnl\|bosTau2\|chrX (22067600-22068301)
	274-974, gnl\|Hg17\|chrX (70255447-70256148)
	274-974, gnl\|Mm7\|chrX (96745615-96746310)