Ss1.1-Ova1-OVRM10212C03.5
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TGAGCATTTGTCCCCAGTGTCTTCTGTTTACTTAAGGATGCGCTCACTCAGCATGGCCCT
TGAGTGAAGTAAGCAGCCCGCCTGAGTGGAAGCTGCACATTTGCTTCCCCTTGGGGAGTG
GTTTTGGTTTCTGGGAGGTTTCGGTTGGTTTTCCCATGCCCCGGTCCTTGGACTGGTTCC
CGGAGGTCCTGCAGAGCCCCTCCTGCCCAGTAAGGAGGCTGTCTGGTGCCACAGCTGGGC
ACAGAGGGGACCCTTGGATGGGCATTGAGGGGTGGAGATGGTTGGGACCAAGAGTGAGGT
CAGTGCCTTTGTACTGGTCGCCTTCCTGTCCCATTCCTGCCCAGCAGGGCTGGGTTGATT
CTCTCCCAATTTTTTAGGGAGGAAACACAATTGAATGTTGCAAACAGGTGAAGCAAAGTT
GGGCGTCAGCCCTGTGTCCTTAGAGGGAAAACTCGGAGCCCTTTCCCGGCCCCACACACC
ACGTGGCTGTAACAGGACACGCGGCCCGTCAGGCTCTTTGAAATCTGGGCTTAGGGACAC
TTGTGAGGAAGGTGGGGCAGCAGAGCCTGGGGGCCCCTGGGAGCGAGGGTGTGAGACTCC
GCGGAGTACCTAGGCAGCCTGAAAGGAGGGCCACAGACGGGCTCTGCATCTGGCCTTAGG
CTAAGAAAAGAAGAGAAAACAGTGTGAGCAGAGGAAGCCTTCCTGGCGGAGATTACCTGG
AGGTGGCCCAGCCTCTTTGATCTTTGTGCCCCGGGCTTGCTGCAGCTTGCTGCCATCAGG
ACAGCAAATTCCCTTTCCCCTTTTATGTTGGGAACCCACACGGGGCCCTGAAATTGGAAG
CGCTTCTTCCCTCTTGCTTGTAGGAAGTCTTGCCCTGTCTGCAGGGGAGGACTTGCTGGG
GCCTCGTTGTGG
|
Blue-coloured subsequences are predicted RNA structures by RNAz
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TGAGCATTTGTCCCCAGTGTCTTCTGTTTACTTAAGGATGCGCTCACTCAGCATGGCCCT
TGAGTGAAGTAAGCAGCCCGCCTGAGTGGAAGCTGCACATTTGCTTCCCCTTGGGGAGTG
GTTTTGGTTTCTGGGAGGTTTCGGTTGGTTTTCCCATGCCCCGGTCCTTGGACTGGTTCC
CGGAGGTCCTGCAGAGCCCCTCCTGCCCAGTAAGGAGGCTGTCTGGTGCCACAGCTGGGC
ACAGAGGGGACCCTTGGATGGGCATTGAGGGGTGGAGATGGTTGGGACCAAGAGTGAGGT
CAGTGCCTTTGTACTGGTCGCCTTCCTGTCCCATTCCTGCCCAGCAGGGCTGGGTTGATT
CTCTCCCAATTTTTTAGGGAGGAAACACAATTGAATGTTGCAAACAGGTGAAGCAAAGTT
GGGCGTCAGCCCTGTGTCCTTAGAGGGAAAACTCGGAGCCCTTTCCCGGCCCCACACACC
ACGTGGCTGTAACAGGACACGCGGCCCGTCAGGCTCTTTGAAATCTGGGCTTAGGGACAC
TTGTGAGGAAGGTGGGGCAGCAGAGCCTGGGGGCCCCTGGGAGCGAGGGTGTGAGACTCC
GCGGAGTACCTAGGCAGCCTGAAAGGAGGGCCACAGACGGGCTCTGCATCTGGCCTTAGG
CTAAGAAAAGAAGAGAAAACAGTGTGAGCAGAGGAAGCCTTCCTGGCGGAGATTACCTGG
AGGTGGCCCAGCCTCTTTGATCTTTGTGCCCCGGGCTTGCTGCAGCTTGCTGCCATCAGG
ACAGCAAATTCCCTTTCCCCTTTTATGTTGGGAACCCACACGGGGCCCTGAAATTGGAAG
CGCTTCTTCCCTCTTGCTTGTAGGAAGTCTTGCCCTGTCTGCAGGGGAGGACTTGCTGGG
GCCTCGTTGTGG
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
112-236, gnl|bosTau2|chr4 (44163642-44163769) |
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112-236, gnl|hg17|chr7 (47371609-47371791) |
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112-236, gnl|Hg17|chr7 (47371789-47371653) |
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112-236, gnl|loxAfr1|scaffold_98429 (3831-4022) |
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112-236, gnl|panTro1|chr6 (48836932-48837114) |
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112-236, gnl|rheMac2|chr3 (78920183-78920001) |
| |
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260-452, gnl|bosTau2|chr4 (44163822-44164016) |
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260-452, gnl|Hg17|chr7 (47371608-47371381) |
| |
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470-584, gnl|bosTau2|chr4 (44164016-44164132) |
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470-584, gnl|Hg17|chr7 (47371381-47371214) |
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470-584, gnl|Mm7|chr11 (8594190-8594043) |
| |
|
594-909, gnl|bosTau2|chr4 (44164109-44164427) |
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594-909, gnl|Hg17|chr7 (47371263-47370884) |
|
594-909, gnl|Mm7|chr11 (8594081-8593764) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
112-236, gnl|bosTau2|chr4 (44163642-44163769) |
|
112-236, gnl|hg17|chr7 (47371609-47371791) |
|
112-236, gnl|Hg17|chr7 (47371789-47371653) |
|
112-236, gnl|loxAfr1|scaffold_98429 (3831-4022) |
|
112-236, gnl|panTro1|chr6 (48836932-48837114) |
|
112-236, gnl|rheMac2|chr3 (78920183-78920001) |
| |
|
260-452, gnl|bosTau2|chr4 (44163822-44164016) |
|
260-452, gnl|Hg17|chr7 (47371608-47371381) |
| |
|
470-584, gnl|bosTau2|chr4 (44164016-44164132) |
|
470-584, gnl|Hg17|chr7 (47371381-47371214) |
|
470-584, gnl|Mm7|chr11 (8594190-8594043) |
| |
|
594-909, gnl|bosTau2|chr4 (44164109-44164427) |
|
594-909, gnl|Hg17|chr7 (47371263-47370884) |
|
594-909, gnl|Mm7|chr11 (8594081-8593764) |
