Non-Coding RNA Search

Ss1.1-Ova1-OVRM10212C04.5

Sequence:


               
               CCTGGGCCGTCGCCATTGCCGAAGGCTCCCTGCCCTCCCCTCCCGGCGCCCGCGGGGCTC
GGCGGCCGCCCGGCCTAGCAGTAGAAGCCGCGGCGCTCCAGCGCGGCTCCACTTCCCGCC
CCGCTTCCCCTTCCCTCCCCTCCCCGCCCCGCGTCGCTCTCTTGCTCGGGGCGGCTCCTG
ATCCCGCCAGGAGCTCGGCCGGAGGCTCCTCGCTGGGGCGGGGACCTTTCCTCGCCTGGG
GCCGTATCATAATTCTGAATCATGTCTGATAACGGAGAACTGGAAGACAAGCCTCCAGCA
CCCCCTGTGCGAATGAGCAGTACCATTTTTAGTACTGGAGGCAAAGACCCTTTGTCAGCC
AATCACAGTTTGAAACCTTTGCCCTCTGTTCCAGAGGAAAAAAAGCCCAGGAATAAAATC
ATCTCTATATTCTCAAGCACAGAGAAAGGAAGTAAGAAGAAAGAGAAGGAAAGGCCAGAA
ATTTCTCCTCCGTCTGATTTTGAGCACACCATCCATGTTGGTTTTGATGCTGTCACTGGA
GAATTCACTGGCATGCCAGAACAGTGGGCTCGATTATTACAGACCTCCAATATCACCAAA
CTAGAGCAAAAGAAGAATCCTCAGGCTGTGCTGGATGTCTTAAAGTTCTACGACTCCAAC
ACAGTGAAGCAGAAATACCTGAGCTTTACTCCTCCTGGTAAGACATCAGACCTGGTAAAA
GGCTGGCTTAAATGGGATCACAGAGTTGGGGAGCACTTGTAGATAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTGGGCCGTCGCCATTGCCGAAGGCTCCCTGCCCTCCCCTCCCGGCGCCCGCGGGGCTC
GGCGGCCGCCCGGCCTAGCAGTAGAAGCCGCGGCGCTCCAGCGCGGCTCCACTTCCCGCC
CCGCTTCCCCTTCCCTCCCCTCCCCGCCCCGCGTCGCTCTCTTGCTCGGGGCGGCTCCTG
ATCCCGCCAGGAGCTCGGCCGGAGGCTCCTCGCTGGGGCGGGGACCTTTCCTCGCCTGGG
GCCGTATCATAATTCTGAATCATGTCTGATAACGGAGAACTGGAAGACAAGCCTCCAGCA
CCCCCTGTGCGAATGAGCAGTACCATTTTTAGTACTGGAGGCAAAGACCCTTTGTCAGCC
AATCACAGTTTGAAACCTTTGCCCTCTGTTCCAGAGGAAAAAAAGCCCAGGAATAAAATC
ATCTCTATATTCTCAAGCACAGAGAAAGGAAGTAAGAAGAAAGAGAAGGAAAGGCCAGAA
ATTTCTCCTCCGTCTGATTTTGAGCACACCATCCATGTTGGTTTTGATGCTGTCACTGGA
GAATTCACTGGCATGCCAGAACAGTGGGCTCGATTATTACAGACCTCCAATATCACCAAA
CTAGAGCAAAAGAAGAATCCTCAGGCTGTGCTGGATGTCTTAAAGTTCTACGACTCCAAC
ACAGTGAAGCAGAAATACCTGAGCTTTACTCCTCCTGGTAAGACATCAGACCTGGTAAAA
GGCTGGCTTAAATGGGATCACAGAGTTGGGGAGCACTTGTAGATAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61876234|ref|XP_613789.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61876234|ref|XP_613789.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               589-708, - strand, RNAz p=0.994611

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               589-708, - strand, RNAz p=0.994611

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-241, gnl|bosTau2|chr1 (43419627-43419867)
               

               
               1-241, gnl|Hg17|chr3 (197955100-197955339)
               

               
               1-241, gnl|Mm7|chr16 (31753815-31753612)
               


               
               550-746, gnl|bosTau2|chr1 (43477446-43477643)
               

               
               550-746, gnl|Hg17|chr3 (198018198-198018389)
               

               
               550-746, gnl|Mm7|chr16 (31718525-31718354)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-241, gnl|bosTau2|chr1 (43419627-43419867)
               

               
               1-241, gnl|Hg17|chr3 (197955100-197955339)
               

               
               1-241, gnl|Mm7|chr16 (31753815-31753612)
               


               
               550-746, gnl|bosTau2|chr1 (43477446-43477643)
               

               
               550-746, gnl|Hg17|chr3 (198018198-198018389)
               

               
               550-746, gnl|Mm7|chr16 (31718525-31718354)

	1-241, gnl\|bosTau2\|chr1 (43419627-43419867)
	1-241, gnl\|Hg17\|chr3 (197955100-197955339)
	1-241, gnl\|Mm7\|chr16 (31753815-31753612)

	550-746, gnl\|bosTau2\|chr1 (43477446-43477643)
	550-746, gnl\|Hg17\|chr3 (198018198-198018389)
	550-746, gnl\|Mm7\|chr16 (31718525-31718354)