Ss1.1-Ova1-OVRM10213E08.5
|
CGCGGGCCTGGACCAAGGAGGCTGCAAGGACGGGGGCGTCTGTCTGCTCTCCGGGAGCAG
GGGGGCATCTTTTGGGCGCGTGGCATCCATGAAGCTGGATTACAGGCACCAGGACGAGGC
CGTCATTTTAAGTTACGCCAATGGGGATAATTGCCCTCCAGAAACGGAAGAAGGCGACCC
GTGTGTGTTCCCCTTCACGCTCAACGGGAAGAGCTACGAGGAGTGCGTGCTGGAGGGCAG
GGCCAGGCTCTGGTGCGCCACCACCGCCGACTACGACAGAGACCACGAGTGGGGCTTCTG
CAGACACTCAAACAGCCACCGGACGTCGGCGATCATCTTCAAGTGCGACGAGGACGCCGA
CGTGGGGCGGCCCCAGGTCTTCAGCGAAGTTCGTGGGTGCGAGGTGACATTTGAGTGGAA
GACAAAAGTCGTCTGCCCCCCGAAGAAGATGGAGTGCAAATTCGTCCAGAAACACAGAAC
CTACGACCTGCGGCTGCTGTCCTCGCTCACCGGGTCCTGGTTCTTTGTTCACGACGGGGC
CTCGTACTACCTCAATTTGTGTCAGAGGATATACAAAGGGCCCCTTGACTGCTCGGACAG
GGCCAGCGTCTGCAAGAAGAACCCATCGGGTAACGTCCAGGTGTTGGGGCTTGTTCACAC
ACAGAAGCTGGACGTCATCGGTGACAGAGTCATCGTAACTTACTCAAAAGGCCATCAGTG
TGGTGGGAATAAGACGGCGTCCACCGTCATCGAGCTGACCTGTGCCAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
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CGCGGGCCTGGACCAAGGAGGCTGCAAGGACGGGGGCGTCTGTCTGCTCTCCGGGAGCAG
GGGGGCATCTTTTGGGCGCGTGGCATCCATGAAGCTGGATTACAGGCACCAGGACGAGGC
CGTCATTTTAAGTTACGCCAATGGGGATAATTGCCCTCCAGAAACGGAAGAAGGCGACCC
GTGTGTGTTCCCCTTCACGCTCAACGGGAAGAGCTACGAGGAGTGCGTGCTGGAGGGCAG
GGCCAGGCTCTGGTGCGCCACCACCGCCGACTACGACAGAGACCACGAGTGGGGCTTCTG
CAGACACTCAAACAGCCACCGGACGTCGGCGATCATCTTCAAGTGCGACGAGGACGCCGA
CGTGGGGCGGCCCCAGGTCTTCAGCGAAGTTCGTGGGTGCGAGGTGACATTTGAGTGGAA
GACAAAAGTCGTCTGCCCCCCGAAGAAGATGGAGTGCAAATTCGTCCAGAAACACAGAAC
CTACGACCTGCGGCTGCTGTCCTCGCTCACCGGGTCCTGGTTCTTTGTTCACGACGGGGC
CTCGTACTACCTCAATTTGTGTCAGAGGATATACAAAGGGCCCCTTGACTGCTCGGACAG
GGCCAGCGTCTGCAAGAAGAACCCATCGGGTAACGTCCAGGTGTTGGGGCTTGTTCACAC
ACAGAAGCTGGACGTCATCGGTGACAGAGTCATCGTAACTTACTCAAAAGGCCATCAGTG
TGGTGGGAATAAGACGGCGTCCACCGTCATCGAGCTGACCTGTGCCAA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
158-308, gnl|bosTau2|chr9 (59106785-59106935) |
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158-308, gnl|canFam2|chr1 (52290039-52290243) |
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158-308, gnl|danRer3|chr20 (49998746-49998938) |
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158-308, gnl|dasNov1|scaffold_8042 (56657-56861) |
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158-308, gnl|echTel1|scaffold_286606 (111537-111729) |
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158-308, gnl|fr1|chrUn (154815334-154815514) |
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158-308, gnl|galGal2|chr3 (41608659-41608475) |
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158-308, gnl|hg17|chr6 (160471541-160471730) |
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158-308, gnl|Hg17|chr6 (160471568-160471718) |
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158-308, gnl|loxAfr1|scaffold_34096 (31612-31424) |
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158-308, gnl|mm7|chr17 (11409878-11409678) |
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158-308, gnl|Mm7|chr17 (11409836-11409686) |
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158-308, gnl|monDom2|scaffold_0 (43206444-43206240) |
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158-308, gnl|panTro1|chr5 (164335479-164335668) |
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158-308, gnl|rheMac2|chr4 (157075933-157076137) |
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158-308, gnl|rn3|chr1 (42334780-42334982) |
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158-308, gnl|tetNig1|chr14 (9147801-9147633) |
| |
|
313-553, gnl|bosTau2|chr9 (59108047-59108288) |
|
313-553, gnl|Hg17|chr6 (160475397-160475638) |
|
313-553, gnl|Mm7|chr17 (11409160-11408923) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
158-308, gnl|bosTau2|chr9 (59106785-59106935) |
|
158-308, gnl|canFam2|chr1 (52290039-52290243) |
|
158-308, gnl|danRer3|chr20 (49998746-49998938) |
|
158-308, gnl|dasNov1|scaffold_8042 (56657-56861) |
|
158-308, gnl|echTel1|scaffold_286606 (111537-111729) |
|
158-308, gnl|fr1|chrUn (154815334-154815514) |
|
158-308, gnl|galGal2|chr3 (41608659-41608475) |
|
158-308, gnl|hg17|chr6 (160471541-160471730) |
|
158-308, gnl|Hg17|chr6 (160471568-160471718) |
|
158-308, gnl|loxAfr1|scaffold_34096 (31612-31424) |
|
158-308, gnl|mm7|chr17 (11409878-11409678) |
|
158-308, gnl|Mm7|chr17 (11409836-11409686) |
|
158-308, gnl|monDom2|scaffold_0 (43206444-43206240) |
|
158-308, gnl|panTro1|chr5 (164335479-164335668) |
|
158-308, gnl|rheMac2|chr4 (157075933-157076137) |
|
158-308, gnl|rn3|chr1 (42334780-42334982) |
|
158-308, gnl|tetNig1|chr14 (9147801-9147633) |
| |
|
313-553, gnl|bosTau2|chr9 (59108047-59108288) |
|
313-553, gnl|Hg17|chr6 (160475397-160475638) |
|
313-553, gnl|Mm7|chr17 (11409160-11408923) |
