Non-Coding RNA Search

Ss1.1-Ova2-C0003104_G08.5

Sequence:


               
               TCCAGGAAGAGCTGGTCCCCATGGCTGAGCTGGTCCCCATGGCTGAATTGGAAGAGGCCA
TAGCACCAGGCACTGAGGCTCAGGGTGGTGCTGGCTCTAGTGGGGACTTGGAGGTGTCCC
TAATGGTTCAGCTCCAGCAGTTACCACTAGGGGGCAACGGAGAAGAAGGGGGTCACCCCC
GAGCCATTAATAACCAGTACTCATTTGTCTGAGATACCTGCCCACCCTCCATTTTCCTGC
TCCCAGCCTTAAGTTGTGAGACTGGGCTGGGTAAGAACACAGAGGAAAGTGGGAGTCCCC
TCCCTACATGCTTCCTGACCCTTGTCAGCCAAGGGTGTGTATGTTGGTACAAGTAGAGGT
TCAAGAGCCCTGTTAAGTCCCCAGTTACTACACTACAGGTGCCCTTGCCCCGAGGCCAAG
GACTTGGGCTCCATTACCTCCCTGAGGGGCTCTTATGGTCAGCCCCATCCCTGGGGGCTG
TTTCCCCCACTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCAGGAAGAGCTGGTCCCCATGGCTGAGCTGGTCCCCATGGCTGAATTGGAAGAGGCCA
TAGCACCAGGCACTGAGGCTCAGGGTGGTGCTGGCTCTAGTGGGGACTTGGAGGTGTCCC
TAATGGTTCAGCTCCAGCAGTTACCACTAGGGGGCAACGGAGAAGAAGGGGGTCACCCCC
GAGCCATTAATAACCAGTACTCATTTGTCTGAGATACCTGCCCACCCTCCATTTTCCTGC
TCCCAGCCTTAAGTTGTGAGACTGGGCTGGGTAAGAACACAGAGGAAAGTGGGAGTCCCC
TCCCTACATGCTTCCTGACCCTTGTCAGCCAAGGGTGTGTATGTTGGTACAAGTAGAGGT
TCAAGAGCCCTGTTAAGTCCCCAGTTACTACACTACAGGTGCCCTTGCCCCGAGGCCAAG
GACTTGGGCTCCATTACCTCCCTGAGGGGCTCTTATGGTCAGCCCCATCCCTGGGGGCTG
TTTCCCCCACTA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               40-487, - strand, RNAz p=0.99964

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-487, - strand, RNAz p=0.99964

Predicted microRNA(s): 3 entry(ies)

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Predicted microRNA(s): 3 entry(ies)

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               89-156, + strand, RNAmicro p=0.99565
               

               
               223-300, + strand, RNAmicro p=0.993155
               

               
               209-307, - strand, RNAmicro p=0.9776

Predicted microRNA(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               89-156, + strand, RNAmicro p=0.99565
               

               
               223-300, + strand, RNAmicro p=0.993155
               

               
               209-307, - strand, RNAmicro p=0.9776

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               40-487, UI-R-EB1-clf-p-10-0-UI.s1 UI-R-EB1 Rattus norvegicus cDNA clone 
(gb|BM385305.1|), blast E-value=0, identity=99.78% 
               

               
               40-487, UI-R-DQ1-clj-f-22-0-UI.s1 UI-R-DQ1 Rattus norvegicus cDNA clone 
(gb|BQ199225.1|), blast E-value=0, identity=99.78% 
               

               
               40-487, UI-R-DQ1-clh-d-02-0-UI.s1 UI-R-DQ1 Rattus norvegicus cDNA clone 
(gb|BQ199705.1|), blast E-value=0, identity=99.55% 
               

               
               40-487, UI-R-FF0-coz-l-03-0-UI.s1 NCI_CGAP_FF0 Rattus norvegicus cDNA clone 
(gb|BQ780455.1|), blast E-value=0, identity=99.78% 
               

               
               40-487, UI-R-FF0-cpa-l-14-0-UI.s1 NCI_CGAP_FF0 Rattus norvegicus cDNA clone 
(gb|BU759265.1|), blast E-value=0, identity=99.78% 
               

               
               40-487, UI-R-AD1-zn-e-04-0-UI.s10 UI-R-AD1 Rattus norvegicus cDNA clone 
(gb|CK839692.1|), blast E-value=0, identity=99.55%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               40-487, UI-R-EB1-clf-p-10-0-UI.s1 UI-R-EB1 Rattus norvegicus cDNA clone 
(gb|BM385305.1|), blast E-value=0, identity=99.78% 
               

               
               40-487, UI-R-DQ1-clj-f-22-0-UI.s1 UI-R-DQ1 Rattus norvegicus cDNA clone 
(gb|BQ199225.1|), blast E-value=0, identity=99.78% 
               

               
               40-487, UI-R-DQ1-clh-d-02-0-UI.s1 UI-R-DQ1 Rattus norvegicus cDNA clone 
(gb|BQ199705.1|), blast E-value=0, identity=99.55% 
               

               
               40-487, UI-R-FF0-coz-l-03-0-UI.s1 NCI_CGAP_FF0 Rattus norvegicus cDNA clone 
(gb|BQ780455.1|), blast E-value=0, identity=99.78% 
               

               
               40-487, UI-R-FF0-cpa-l-14-0-UI.s1 NCI_CGAP_FF0 Rattus norvegicus cDNA clone 
(gb|BU759265.1|), blast E-value=0, identity=99.78% 
               

               
               40-487, UI-R-AD1-zn-e-04-0-UI.s10 UI-R-AD1 Rattus norvegicus cDNA clone 
(gb|CK839692.1|), blast E-value=0, identity=99.55%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-487, gnl|bosTau2|chr25 (24900541-24900055)
               

               
               1-487, gnl|Hg17|chr16 (28792434-28792903)
               

               
               1-487, gnl|Mm7|chr7 (122564166-122563679)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-487, gnl|bosTau2|chr25 (24900541-24900055)
               

               
               1-487, gnl|Hg17|chr16 (28792434-28792903)
               

               
               1-487, gnl|Mm7|chr7 (122564166-122563679)

	89-156, + strand, RNAmicro p=0.99565
	223-300, + strand, RNAmicro p=0.993155
	209-307, - strand, RNAmicro p=0.9776

	40-487, UI-R-EB1-clf-p-10-0-UI.s1 UI-R-EB1 Rattus norvegicus cDNA clone (gb\|BM385305.1\|), blast E-value=0, identity=99.78%
	40-487, UI-R-DQ1-clj-f-22-0-UI.s1 UI-R-DQ1 Rattus norvegicus cDNA clone (gb\|BQ199225.1\|), blast E-value=0, identity=99.78%
	40-487, UI-R-DQ1-clh-d-02-0-UI.s1 UI-R-DQ1 Rattus norvegicus cDNA clone (gb\|BQ199705.1\|), blast E-value=0, identity=99.55%
	40-487, UI-R-FF0-coz-l-03-0-UI.s1 NCI_CGAP_FF0 Rattus norvegicus cDNA clone (gb\|BQ780455.1\|), blast E-value=0, identity=99.78%
	40-487, UI-R-FF0-cpa-l-14-0-UI.s1 NCI_CGAP_FF0 Rattus norvegicus cDNA clone (gb\|BU759265.1\|), blast E-value=0, identity=99.78%
	40-487, UI-R-AD1-zn-e-04-0-UI.s10 UI-R-AD1 Rattus norvegicus cDNA clone (gb\|CK839692.1\|), blast E-value=0, identity=99.55%

	1-487, gnl\|bosTau2\|chr25 (24900541-24900055)
	1-487, gnl\|Hg17\|chr16 (28792434-28792903)
	1-487, gnl\|Mm7\|chr7 (122564166-122563679)