Non-Coding RNA Search

Ss1.1-Ova2-C0003104_N10.5

Sequence:


               
               GGCCGCGGCTCGAGTACATTGTGTTTCCAAGTAACCATGTTTGTGGTGATTACTACATTG
ACAGTCTGAACGTCACAGGCCCCAAAAGGCCATGGACCAGTCATACAGTTGCTATTGGTT
CTGGTGCACTTGCTGCTTTGTAACTTACCTCTGACTGTCTCTCTCTAGGCAGCCAGCTCC
AATTCGAGGATTCTGGATCGTCCCGGATATCCTGGGGCCCACAATGATCTGCATCACCAG
TACCTATGAATGTCTCATAAGGCCTTTATTGTATGTCCCATTCTGTATTAGTCACATAGC
TCTCTTTAATTCTGCCAAATCAAAGGTAGAAAAATGCTCTTAATTCCTAGTTTGACTGAC
TCTGTATAAGCTTTGGCTTCTGAATTTAGTCGGTATTTCTGTTTTCTTCATCTCTGAAAA
GTTTCATTTTAGACATTGTGGGATTTTTTTGACTTGTTTTGCCTCCTAAGAATCATAGCT
TTTCTGTTCTGTTTTTGGGATAGGGTCTTAGTCTGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCCGCGGCTCGAGTACATTGTGTTTCCAAGTAACCATGTTTGTGGTGATTACTACATTG
ACAGTCTGAACGTCACAGGCCCCAAAAGGCCATGGACCAGTCATACAGTTGCTATTGGTT
CTGGTGCACTTGCTGCTTTGTAACTTACCTCTGACTGTCTCTCTCTAGGCAGCCAGCTCC
AATTCGAGGATTCTGGATCGTCCCGGATATCCTGGGGCCCACAATGATCTGCATCACCAG
TACCTATGAATGTCTCATAAGGCCTTTATTGTATGTCCCATTCTGTATTAGTCACATAGC
TCTCTTTAATTCTGCCAAATCAAAGGTAGAAAAATGCTCTTAATTCCTAGTTTGACTGAC
TCTGTATAAGCTTTGGCTTCTGAATTTAGTCGGTATTTCTGTTTTCTTCATCTCTGAAAA
GTTTCATTTTAGACATTGTGGGATTTTTTTGACTTGTTTTGCCTCCTAAGAATCATAGCT
TTTCTGTTCTGTTTTTGGGATAGGGTCTTAGTCTGC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               191-310, + strand, RNAz p=0.518026

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               191-310, + strand, RNAz p=0.518026

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               76-383, gnl|bosTau2|chr19 (15152236-15151924)
               

               
               76-383, gnl|Hg17|chr17 (5235799-5235485)
               

               
               76-383, gnl|Mm7|chr11 (71029455-71029163)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               76-383, gnl|bosTau2|chr19 (15152236-15151924)
               

               
               76-383, gnl|Hg17|chr17 (5235799-5235485)
               

               
               76-383, gnl|Mm7|chr11 (71029455-71029163)

	76-383, gnl\|bosTau2\|chr19 (15152236-15151924)
	76-383, gnl\|Hg17\|chr17 (5235799-5235485)
	76-383, gnl\|Mm7\|chr11 (71029455-71029163)