Non-Coding RNA Search

Ss1.1-Ova2-C0003260_J18.5

Sequence:


               
               GGGCATTGTCCGGCTCTAGCTGCGGCGGTCCGACTGCGAGAGCAGCGGCGGCGGCGCGGG
GCTGCAGTGGGCGTCGCGCGGCCGAGACCATGGCTGGAGGCAAAGCTGGAAAAGACAGCG
GGAAGGCCAAGGCTAAGGCAGTGTCTCGCTCACAGAGAGCTGGGCTCCAGTTTCCTGTGG
GCCGCATCCACAGACACTTGAAGACTCGCACCACAAGCCATGGACGGGTGGGCGCCACTG
CTGCTGTGTACAGTGCTGCAATTCTGGAGTACCTCACAGCTGAGGTGTTGGAGTTGGCAG
GTAATGCTTCTAAAGATCTCAAAGTAAAACGCATCACCCCACGTCACTTACAGCTTGCAA
TCCGAGGTGACGAAGAGTTGGATTCACTGATCAAGGCTACCATAGCCGGGGGCGGTGTGA
TTCCGCACATCCACAAGTCTCTGAATCGGAAGAAGGGGCAGCAGAAAACTGCTTAGGACG
TGAGTCACTGACCTGCTGTCCTCACTGTGTGTGACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGCATTGTCCGGCTCTAGCTGCGGCGGTCCGACTGCGAGAGCAGCGGCGGCGGCGCGGG
GCTGCAGTGGGCGTCGCGCGGCCGAGACCATGGCTGGAGGCAAAGCTGGAAAAGACAGCG
GGAAGGCCAAGGCTAAGGCAGTGTCTCGCTCACAGAGAGCTGGGCTCCAGTTTCCTGTGG
GCCGCATCCACAGACACTTGAAGACTCGCACCACAAGCCATGGACGGGTGGGCGCCACTG
CTGCTGTGTACAGTGCTGCAATTCTGGAGTACCTCACAGCTGAGGTGTTGGAGTTGGCAG
GTAATGCTTCTAAAGATCTCAAAGTAAAACGCATCACCCCACGTCACTTACAGCTTGCAA
TCCGAGGTGACGAAGAGTTGGATTCACTGATCAAGGCTACCATAGCCGGGGGCGGTGTGA
TTCCGCACATCCACAAGTCTCTGAATCGGAAGAAGGGGCAGCAGAAAACTGCTTAGGACG
TGAGTCACTGACCTGCTGTCCTCACTGTGTGTGACT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q71PD7_BRARE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q71PD7_BRARE

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               146-265, + strand, RNAz p=0.745753

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               146-265, + strand, RNAz p=0.745753

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               92-471, gnl|bosTau2|chr22 (31941616-31941237)
               

               
               92-471, gnl|Hg17|chr8 (71178966-71178587)
               

               
               92-471, gnl|Mm7|chr6 (116199412-116199791)
               


               
               107-433, gnl|bosTau2|chr12 (1673218-1672892)
               

               
               107-433, gnl|Hg17|chr6 (26380751-26380431)
               

               
               107-433, gnl|Mm7|chr13 (22899911-22900237)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               92-471, gnl|bosTau2|chr22 (31941616-31941237)
               

               
               92-471, gnl|Hg17|chr8 (71178966-71178587)
               

               
               92-471, gnl|Mm7|chr6 (116199412-116199791)
               


               
               107-433, gnl|bosTau2|chr12 (1673218-1672892)
               

               
               107-433, gnl|Hg17|chr6 (26380751-26380431)
               

               
               107-433, gnl|Mm7|chr13 (22899911-22900237)

	92-471, gnl\|bosTau2\|chr22 (31941616-31941237)
	92-471, gnl\|Hg17\|chr8 (71178966-71178587)
	92-471, gnl\|Mm7\|chr6 (116199412-116199791)

	107-433, gnl\|bosTau2\|chr12 (1673218-1672892)
	107-433, gnl\|Hg17\|chr6 (26380751-26380431)
	107-433, gnl\|Mm7\|chr13 (22899911-22900237)