Non-Coding RNA Search

Ss1.1-Ova2-C0003260_N02.5

Sequence:


               
               CGGCACATCAGGGCGTCCGGTCTTCTCTGTCGCTAGGAAGCGGGCAACCGGAGGAAAGAT
GGTTTACATCTCGAATGGTCAGGTGTTAGACAGCCGGAATCAGTCCCCCTGGAGATTGTC
TTTCATAACAGATTTCTTCTGGGGAATAGCAGAATTTGTGGTTTTTTTTTTCAAAACTCT
GCTTCAGCAAGATGTGAAGAAAAGAAGAGGCTACGGGGGCTCCTCTGATTCCAGATACGA
TGACGGAAGAGGGCCACCAGGAAACCCTCCACGAAGAATGGGTCGGATCAGTCACCTTCG
TGGCCCCAGCCCTCCTCCAATGGCCGGTGGATGAGGAAGGTAAACGTCTGCTCTGAGAAG
CAGACAACTAGACATACACGCCTAGAAGGGAACCATCAAGAGGTGAGGAGCGGCTCATGA
GGAGAAGATGGTGTATGTCCAAACAAGGACTGCTCTGTGTCCTCACAGAAGAATGAGGTC
ATGCTGGGAACTCCCTCTGCAGGATCTGGCCTGACTGATGTGCAGTTCTATAAATGTACA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGCACATCAGGGCGTCCGGTCTTCTCTGTCGCTAGGAAGCGGGCAACCGGAGGAAAGAT
GGTTTACATCTCGAATGGTCAGGTGTTAGACAGCCGGAATCAGTCCCCCTGGAGATTGTC
TTTCATAACAGATTTCTTCTGGGGAATAGCAGAATTTGTGGTTTTTTTTTTCAAAACTCT
GCTTCAGCAAGATGTGAAGAAAAGAAGAGGCTACGGGGGCTCCTCTGATTCCAGATACGA
TGACGGAAGAGGGCCACCAGGAAACCCTCCACGAAGAATGGGTCGGATCAGTCACCTTCG
TGGCCCCAGCCCTCCTCCAATGGCCGGTGGATGAGGAAGGTAAACGTCTGCTCTGAGAAG
CAGACAACTAGACATACACGCCTAGAAGGGAACCATCAAGAGGTGAGGAGCGGCTCATGA
GGAGAAGATGGTGTATGTCCAAACAAGGACTGCTCTGTGTCCTCACAGAAGAATGAGGTC
ATGCTGGGAACTCCCTCTGCAGGATCTGGCCTGACTGATGTGCAGTTCTATAAATGTACA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               SELK_RAT

Coded protein: 1 entry(ies)

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Protein identifier


               
               SELK_RAT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               145-431, + strand, RNAz p=0.983079

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               145-431, + strand, RNAz p=0.983079

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               66-540, gnl|bosTau2|chr1 (31730374-31730877)
               

               
               66-540, gnl|Hg17|chr6 (132182917-132182428)
               

               
               66-540, gnl|Mm7|chr11 (23510725-23510252)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               66-540, gnl|bosTau2|chr1 (31730374-31730877)
               

               
               66-540, gnl|Hg17|chr6 (132182917-132182428)
               

               
               66-540, gnl|Mm7|chr11 (23510725-23510252)

	66-540, gnl\|bosTau2\|chr1 (31730374-31730877)
	66-540, gnl\|Hg17\|chr6 (132182917-132182428)
	66-540, gnl\|Mm7\|chr11 (23510725-23510252)