Non-Coding RNA Search

Ss1.1-Ova2-C0003260_O12.5

Sequence:


               
               CAGCTGGACAGAAATGGGCTATAACATTGGAGTCCGACTGATTGAAGATTTTTTGGCAAG
GTCAAATGTTGGAAGATGTCATGACTTTCGGGAAACTGCTGATGTCATTGCTAAGGTGGC
GTTCAAGATGTACCTGGGCATCACTCCAAGCATCACCAACTGGAGCCCAGCTGGAGATGA
GTTCTCCCTCATCTTGGAAAATAACCCCTTGGTGGACTTTGTGGAGCTCCCCGATAACCA
CTCAGCCCTCATTTACTCCAATCTCCTGTGTGGGGTGTTGCGGGGAGCCCTGGAGATGGT
CCAGATGGCTGTGGAGGCCAAGTTTGTCCAGGACACTCTGAAGGGAGATGGCGTGACAGA
AATCAGGATGAGGTTCATCAGGCGGATTGAAGACAATCTCCCAGCTGGAGAAGAGTAAGC
TCTCTAGGACTTGGGCAGCCAAGAGGAGCGCCTGCAGGGATGAGAAACAGCAGCGCTCGC
CTCCTCTGCCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGCTGGACAGAAATGGGCTATAACATTGGAGTCCGACTGATTGAAGATTTTTTGGCAAG
GTCAAATGTTGGAAGATGTCATGACTTTCGGGAAACTGCTGATGTCATTGCTAAGGTGGC
GTTCAAGATGTACCTGGGCATCACTCCAAGCATCACCAACTGGAGCCCAGCTGGAGATGA
GTTCTCCCTCATCTTGGAAAATAACCCCTTGGTGGACTTTGTGGAGCTCCCCGATAACCA
CTCAGCCCTCATTTACTCCAATCTCCTGTGTGGGGTGTTGCGGGGAGCCCTGGAGATGGT
CCAGATGGCTGTGGAGGCCAAGTTTGTCCAGGACACTCTGAAGGGAGATGGCGTGACAGA
AATCAGGATGAGGTTCATCAGGCGGATTGAAGACAATCTCCCAGCTGGAGAAGAGTAAGC
TCTCTAGGACTTGGGCAGCCAAGAGGAGCGCCTGCAGGGATGAGAAACAGCAGCGCTCGC
CTCCTCTGCCCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61874686|ref|XP_581899.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61874686|ref|XP_581899.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               153-272, - strand, RNAz p=0.781835

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               153-272, - strand, RNAz p=0.781835

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               114-300, gnl|bosTau2|chr3 (76752394-76752580)
               

               
               114-300, gnl|Hg17|chr1 (36272674-36272488)
               

               
               114-300, gnl|Mm7|chr4 (125718535-125718721)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               114-300, gnl|bosTau2|chr3 (76752394-76752580)
               

               
               114-300, gnl|Hg17|chr1 (36272674-36272488)
               

               
               114-300, gnl|Mm7|chr4 (125718535-125718721)

	114-300, gnl\|bosTau2\|chr3 (76752394-76752580)
	114-300, gnl\|Hg17\|chr1 (36272674-36272488)
	114-300, gnl\|Mm7\|chr4 (125718535-125718721)