Non-Coding RNA Search

Ss1.1-Ova2-C0003263_F10.5

Sequence:


               
               GCAGCGAGAGACCGGCGAGCTCCGATCGGTCGGAGCTAACCGCTGCCAGGCGGGCTGCCG
CGGCCCCGCACACGCCCCAGTCGAGCGAAGATGGTGGGCCGGAACAGCGCCATCGCCGCG
GGCGTGTGCGGTGCCCTCTTCATAGGGTACTGCATCTACTTTGACCGCAAAAGGCGGAGT
GACCCCAACTTCAAGAACAGGCTTCGAGAACGAAGAAAGAAACAGAAGCTTGCTAAGGAG
AGAGCTGGGCTTTCCAAGTTACCTGATTTAAAAGATGCTGAAGCTGTTCAGAAATTCTTC
CTTGAAGAGATACAGCTTGGTGAAGAGTTATTAGCACAAGGTGACTATGAGAAGGGTGTG
GACCACCTGACAAATGCAATCGCTGTGTGTGGACAGCCTCAGCAGTTGCTGCAAGTGTTA
CAACAGACTCTTCCACCACCAGTGTTCCAGATGCTTCTGACCAAGCTTCCAACCATTAGT
CAGAGAATTGTCAGTGCTCAGAGCTTGGCTGAGGATGATGTGGAATGAGCCAGACACCAA
CATGATAAAATCTCAGTAAAATGATAACAGTTAGCTGCAGGCTGCTCTGCTCGGGGGGAT
AAGGGCAAACTGTGCTTGTCATGAACTGTCTCACACTGACATCTCCAAAGTGAACCTGAA
CTTTGGTAGAGCCATTGTCTGTTCTATTTATTTTTCCAGTGAGAAGTATTTTGATAGCTT
TTCATTTTATAAATACACTGCGTTAACCAAAAGATCATGGATTTCGTTTGTTCTTGACAT
GCAGTTCAATGTAAATACAGTAGTATTAGGTAGAGACTCCTGGTGATTTTAAGGATTGGA
AAGACTGAGGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAGCGAGAGACCGGCGAGCTCCGATCGGTCGGAGCTAACCGCTGCCAGGCGGGCTGCCG
CGGCCCCGCACACGCCCCAGTCGAGCGAAGATGGTGGGCCGGAACAGCGCCATCGCCGCG
GGCGTGTGCGGTGCCCTCTTCATAGGGTACTGCATCTACTTTGACCGCAAAAGGCGGAGT
GACCCCAACTTCAAGAACAGGCTTCGAGAACGAAGAAAGAAACAGAAGCTTGCTAAGGAG
AGAGCTGGGCTTTCCAAGTTACCTGATTTAAAAGATGCTGAAGCTGTTCAGAAATTCTTC
CTTGAAGAGATACAGCTTGGTGAAGAGTTATTAGCACAAGGTGACTATGAGAAGGGTGTG
GACCACCTGACAAATGCAATCGCTGTGTGTGGACAGCCTCAGCAGTTGCTGCAAGTGTTA
CAACAGACTCTTCCACCACCAGTGTTCCAGATGCTTCTGACCAAGCTTCCAACCATTAGT
CAGAGAATTGTCAGTGCTCAGAGCTTGGCTGAGGATGATGTGGAATGAGCCAGACACCAA
CATGATAAAATCTCAGTAAAATGATAACAGTTAGCTGCAGGCTGCTCTGCTCGGGGGGAT
AAGGGCAAACTGTGCTTGTCATGAACTGTCTCACACTGACATCTCCAAAGTGAACCTGAA
CTTTGGTAGAGCCATTGTCTGTTCTATTTATTTTTCCAGTGAGAAGTATTTTGATAGCTT
TTCATTTTATAAATACACTGCGTTAACCAAAAGATCATGGATTTCGTTTGTTCTTGACAT
GCAGTTCAATGTAAATACAGTAGTATTAGGTAGAGACTCCTGGTGATTTTAAGGATTGGA
AAGACTGAGGAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q6AZ66_RAT

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q6AZ66_RAT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               619-739, - strand, RNAz p=0.943558

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               619-739, - strand, RNAz p=0.943558

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               21-781, gnl|bosTau2|chr23 (20993354-20992580)
               

               
               21-781, gnl|Hg17|chrX (72225909-72226760)
               

               
               21-781, gnl|Mm7|chr2 (153566964-153567725)
               


               
               72-739, gnl|bosTau2|chr13 (47685081-47685751)
               

               
               72-739, gnl|Hg17|chrX (72225962-72226639)
               

               
               72-739, gnl|Mm7|chr2 (153567010-153567683)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               21-781, gnl|bosTau2|chr23 (20993354-20992580)
               

               
               21-781, gnl|Hg17|chrX (72225909-72226760)
               

               
               21-781, gnl|Mm7|chr2 (153566964-153567725)
               


               
               72-739, gnl|bosTau2|chr13 (47685081-47685751)
               

               
               72-739, gnl|Hg17|chrX (72225962-72226639)
               

               
               72-739, gnl|Mm7|chr2 (153567010-153567683)

	21-781, gnl\|bosTau2\|chr23 (20993354-20992580)
	21-781, gnl\|Hg17\|chrX (72225909-72226760)
	21-781, gnl\|Mm7\|chr2 (153566964-153567725)

	72-739, gnl\|bosTau2\|chr13 (47685081-47685751)
	72-739, gnl\|Hg17\|chrX (72225962-72226639)
	72-739, gnl\|Mm7\|chr2 (153567010-153567683)