Ss1.1-Ova2-C0003263_M17.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTAACATTGTGTGGAACTATTGTCAATGTGCTTGAGGTGTTGAGGGGCCAAAGCTGGGAC TCTCTAAGGTCCTCCCCACCTCTCAGTCTCTTTCTCTCAGACTTTCCTTCCCTACAGCTC CCATGGCCTCTGCACTGATTTCTATCCACAGTCAGCCTTCTCCCTGCCTGTGAGAGGTGG GGGCAGTCCTGGCTGAGACTCGTGCCCTGCAGTGTGGTTGCCAGAAAATGTTGTTGCTAA CACACCAGTTTCTTGTTCTGGGAGGTCAAAGCCAGGCCCCCAGTTGGCTTGAAGGGACAT TTTCAGTTTTCTTTGTGTCACTTGGGGTATCAGTGGCTCTCATGCTTCCCTAATAAACTC AACTTTGTCTGACTGCTGACTGTGGTGGCAAGACTAGCTGGAGAGGGACTCGCTGTTCAC AGAGTCATTGTGTAGGAATGCTCTCCCACAGAGGAACCTGCAGCTCTAGCTGTTTCAAGC CTAGGCAGCTCCAGTCAGAGTGTTCCTGTCTGGACA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTAACATTGTGTGGAACTATTGTCAATGTGCTTGAGGTGTTGAGGGGCCAAAGCTGGGAC TCTCTAAGGTCCTCCCCACCTCTCAGTCTCTTTCTCTCAGACTTTCCTTCCCTACAGCTC CCATGGCCTCTGCACTGATTTCTATCCACAGTCAGCCTTCTCCCTGCCTGTGAGAGGTGG GGGCAGTCCTGGCTGAGACTCGTGCCCTGCAGTGTGGTTGCCAGAAAATGTTGTTGCTAA CACACCAGTTTCTTGTTCTGGGAGGTCAAAGCCAGGCCCCCAGTTGGCTTGAAGGGACAT TTTCAGTTTTCTTTGTGTCACTTGGGGTATCAGTGGCTCTCATGCTTCCCTAATAAACTC AACTTTGTCTGACTGCTGACTGTGGTGGCAAGACTAGCTGGAGAGGGACTCGCTGTTCAC AGAGTCATTGTGTAGGAATGCTCTCCCACAGAGGAACCTGCAGCTCTAGCTGTTTCAAGC CTAGGCAGCTCCAGTCAGAGTGTTCCTGTCTGGACA |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 39-182, - strand, RNAz p=0.948961 | |
| 47-138, - strand, RNAz p=0.605791 | |
| 259-366, - strand, RNAz p=0.815836 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 39-182, - strand, RNAz p=0.948961 | |
| 47-138, - strand, RNAz p=0.605791 | |
| 259-366, - strand, RNAz p=0.815836 |
| Homologous human UTR: 3 entry(ies) | More info |
| Homologous human UTR: 3 entry(ies) | Help | Less info |
| 5' of AF281279, - | |
| 5' of AF281279, - | |
| 3' of AF281279, - |
| Homologous human UTR: 3 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of AF281279, - | |
| 5' of AF281279, - | |
| 3' of AF281279, - |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 1-490, gnl|bosTau2|chr22 (12136181-12136691) | |
| 1-490, gnl|canFam2|chr20 (11224535-11224096) | |
| 1-490, gnl|canFam2|chr20 (11224707-11224097) | |
| 1-490, gnl|dasNov1|scaffold_1029 (94675-95078) | |
| 1-490, gnl|dasNov1|scaffold_651 (41996-41414) | |
| 1-490, gnl|echTel1|scaffold_291922 (4245-4848) | |
| 1-490, gnl|echTel1|scaffold_325473 (227841-228288) | |
| 1-490, gnl|hg17|chr3 (10143150-10143601) | |
| 1-490, gnl|Hg17|chr3 (10143211-10143737) | |
| 1-490, gnl|hg17|chrX (8957390-8958009) | |
| 1-490, gnl|loxAfr1|scaffold_39839 (12971-12544) | |
| 1-490, gnl|loxAfr1|scaffold_39839 (13190-12545) | |
| 1-490, gnl|mm7|chr6 (113777195-113777620) | |
| 1-490, gnl|mm7|chr6 (113777025-113777619) | |
| 1-490, gnl|Mm7|chr6 (113777259-113777746) | |
| 1-490, gnl|monDom2|scaffold_5 (36867749-36868238) | |
| 1-490, gnl|monDom2|scaffold_5 (36867454-36868239) | |
| 1-490, gnl|oryCun1|scaffold_161038 (2938-3340) | |
| 1-490, gnl|oryCun1|scaffold_161038 (2791-3348) | |
| 1-490, gnl|panTro1|chr2 (10534980-10535431) | |
| 1-490, gnl|panTro1|chrX (9234477-9235096) | |
| 1-490, gnl|rheMac2|chr2 (50907050-50906601) | |
| 1-490, gnl|rheMac2|chrX (6783216-6783836) | |
| 1-490, gnl|rn3|chr4 (149767125-149767549) | |
| 1-490, gnl|rn3|chr4 (149766957-149767548) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-490, gnl|bosTau2|chr22 (12136181-12136691) | |
| 1-490, gnl|canFam2|chr20 (11224535-11224096) | |
| 1-490, gnl|canFam2|chr20 (11224707-11224097) | |
| 1-490, gnl|dasNov1|scaffold_1029 (94675-95078) | |
| 1-490, gnl|dasNov1|scaffold_651 (41996-41414) | |
| 1-490, gnl|echTel1|scaffold_291922 (4245-4848) | |
| 1-490, gnl|echTel1|scaffold_325473 (227841-228288) | |
| 1-490, gnl|hg17|chr3 (10143150-10143601) | |
| 1-490, gnl|Hg17|chr3 (10143211-10143737) | |
| 1-490, gnl|hg17|chrX (8957390-8958009) | |
| 1-490, gnl|loxAfr1|scaffold_39839 (12971-12544) | |
| 1-490, gnl|loxAfr1|scaffold_39839 (13190-12545) | |
| 1-490, gnl|mm7|chr6 (113777195-113777620) | |
| 1-490, gnl|mm7|chr6 (113777025-113777619) | |
| 1-490, gnl|Mm7|chr6 (113777259-113777746) | |
| 1-490, gnl|monDom2|scaffold_5 (36867749-36868238) | |
| 1-490, gnl|monDom2|scaffold_5 (36867454-36868239) | |
| 1-490, gnl|oryCun1|scaffold_161038 (2938-3340) | |
| 1-490, gnl|oryCun1|scaffold_161038 (2791-3348) | |
| 1-490, gnl|panTro1|chr2 (10534980-10535431) | |
| 1-490, gnl|panTro1|chrX (9234477-9235096) | |
| 1-490, gnl|rheMac2|chr2 (50907050-50906601) | |
| 1-490, gnl|rheMac2|chrX (6783216-6783836) | |
| 1-490, gnl|rn3|chr4 (149767125-149767549) | |
| 1-490, gnl|rn3|chr4 (149766957-149767548) |